CN184889

Overview
NameCN184889
Unique NameCN184889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length369
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12558 contig Csv1_Contig12558:1162..1528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184889 vs. ExPASy Swiss-Prot
Match: MCA4_ARATH (Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.070e-12
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = -3 
Query:  197 NRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 304
            NRE+V   R+ LKKQGFTQQPGLYCHD + + PFIC
Sbjct:  383 NREMVTRARKALKKQGFTQQPGLYCHDGYANAPFIC 418

HSP 2 Score: 30.0314 bits (66), Expect = 9.070e-12
Identity = 12/21 (57.14%), Postives = 17/21 (80.95%), Query Frame = -2 
Query:  306 AYGAFSNAIQIIIAESDGAVT 368
            AYGA SN+IQ I+ E+DG ++
Sbjct:  362 AYGAMSNSIQTILEETDGEIS 382
[Close]
BLAST of CN184889 vs. ExPASy Swiss-Prot
Match: MCA5_ARATH (Metacaspase-5 OS=Arabidopsis thaliana GN=AMC5 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.344e-11
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = -3 
Query:  197 RELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 301
            +ELVL  R++LKKQGF+Q+PGLYC D+ V+ PFIC
Sbjct:  376 KELVLKARKLLKKQGFSQRPGLYCSDSFVNAPFIC 410

HSP 2 Score: 32.7278 bits (73), Expect = 4.344e-11
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = -2 
Query:  306 AYGAFSNAIQIIIAESDGAVT 368
            AYGAF+NA+QII+ E+ G +T
Sbjct:  354 AYGAFTNAVQIILEETKGMIT 374
The following BLAST results are available for this feature:
BLAST of CN184889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MCA4_ARATH9.070e-1269.44Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1... [more]
MCA5_ARATH4.344e-1165.71Metacaspase-5 OS=Arabidopsis thaliana GN=AMC5 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184889 ID=CN184889; Name=CN184889; organism=Citrus sinensis; type=EST; length=369bp
TAAGAGTTTTCTTCAGGGACCAAGATTAATTCGACAAAGACCGAGGCAAA
AGATGTGAAGACTTAAACAAGCAAGCCTGTTGTTTAAGATTTTATTCTAC
ATGAAACTCAAACCATATCCATAAAGAGCACAACAAACCCTGCAAACTGT
TTAAATTATTCGATCTCCTGAACCCCAAAAGCACCCGCTCGTATCAGCAG
ATAAACGGCTTATCAACATGATTATCATGGCAATAAAGGCCAGGTTGCTG
AGTGAATCCCTGCTTCTTCAACATCTGCCTAGTGGACAAAACAAGCTCCC
GGTTTAGTCACTGCACCATCTGATTCAGCAATAATTATCTGAATTGCATT
GCTGAAAGCTCCGTAAGCT
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