CN184884

Overview
NameCN184884
Unique NameCN184884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length359
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11999 contig Csv1_Contig11999:1185..1529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184884 vs. ExPASy Swiss-Prot
Match: MMK1_MEDSA (Mitogen-activated protein kinase homolog MMK1 OS=Medicago sativa GN=MMK1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.280e-18
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = -2
Query:  218 SLHDISDEPVCMSPFSFDFEQHALTEGQMKELIYQEALAFNPEYRQ 355
            SLHDISDEPVCM+PFSFDFEQHALTE QMKELIY+EALAFNPEY+Q
Sbjct:  342 SLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYQQ 387          
BLAST of CN184884 vs. ExPASy Swiss-Prot
Match: MAPK_PEA (Mitogen-activated protein kinase homolog D5 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.353e-18
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = -2
Query:  218 SLHDISDEPVCMSPFSFDFEQHALTEGQMKELIYQEALAFNPEYRQ 355
            SLHDISDEPVC +PFSFDFEQHALTE QMKELIY+EALAFNPEY+Q
Sbjct:  349 SLHDISDEPVCTTPFSFDFEQHALTEEQMKELIYREALAFNPEYQQ 394          
BLAST of CN184884 vs. ExPASy Swiss-Prot
Match: NTF4_TOBAC (Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.153e-17
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = -2
Query:  221 SLHDISDEPVCMSPFSFDFEQHALTEGQMKELIYQEALAFNPEYR 355
            SLHDISDEPVCM+PF+FDFEQHALTE QMKELIY+E LAFNPEY+
Sbjct:  347 SLHDISDEPVCMTPFNFDFEQHALTEEQMKELIYREGLAFNPEYQ 391          
BLAST of CN184884 vs. ExPASy Swiss-Prot
Match: MPK1_ORYSJ (Mitogen-activated protein kinase 1 OS=Oryza sativa subsp. japonica GN=MPK1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.565e-16
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = -2
Query:  221 SLHDISDEPVCMSPFSFDFEQHALTEGQMKELIYQEALAFNPEYR 355
            SLHDISDEPVC SPFSFDFEQHAL+E QMK+LIYQE LAFNP+Y+
Sbjct:  354 SLHDISDEPVCSSPFSFDFEQHALSEEQMKDLIYQEGLAFNPDYQ 398          
BLAST of CN184884 vs. ExPASy Swiss-Prot
Match: MPK6_ARATH (Mitogen-activated protein kinase 6 OS=Arabidopsis thaliana GN=MPK6 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.730e-15
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = -2
Query:  218 SLHDISDEPVCMSPFSFDFEQHALTEGQMKELIYQEALAFNPEYRQ 355
            SLHDISDEP C  PF+FDFE HAL+E QMKELIY+EALAFNPEY+Q
Sbjct:  350 SLHDISDEPECTIPFNFDFENHALSEEQMKELIYREALAFNPEYQQ 395          
BLAST of CN184884 vs. ExPASy Swiss-Prot
Match: MPK5_ORYSJ (Mitogen-activated protein kinase 5 OS=Oryza sativa subsp. japonica GN=MPK5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = -2
Query:  221 LHDISDEPVCMSPFSFDFEQHALTEGQMKELIYQEALAFNPEYR 352
            LHDI+DEP+C+ PFSFDFEQ AL E QMK+LI+ EA+  NP  R
Sbjct:  325 LHDIADEPICLEPFSFDFEQKALNEDQMKQLIFNEAIEMNPNIR 368          
BLAST of CN184884 vs. ExPASy Swiss-Prot
Match: MPK5_ORYSI (Mitogen-activated protein kinase 5 OS=Oryza sativa subsp. indica GN=MPK5 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = -2
Query:  221 LHDISDEPVCMSPFSFDFEQHALTEGQMKELIYQEALAFNPEYR 352
            LHDI+DEP+C+ PFSFDFEQ AL E QMK+LI+ EA+  NP  R
Sbjct:  325 LHDIADEPICLEPFSFDFEQKALNEDQMKQLIFNEAIEMNPNIR 368          
BLAST of CN184884 vs. ExPASy Swiss-Prot
Match: MPK2_ORYSJ (Mitogen-activated protein kinase 2 OS=Oryza sativa subsp. japonica GN=MPK2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.376e-11
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = -2
Query:  227 SLHDISDEPVCMSPFSFDFEQHALTEGQMKELIYQEALAFNPE 355
            SLH+I DEPVC +PFSFDFEQ +LTE  +KE+I++EAL FNPE
Sbjct:  349 SLHEIYDEPVCPAPFSFDFEQPSLTEEDIKEIIWREALKFNPE 391          
BLAST of CN184884 vs. ExPASy Swiss-Prot
Match: MPK3_ARATH (Mitogen-activated protein kinase 3 OS=Arabidopsis thaliana GN=MPK3 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.759e-11
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = -2
Query:  224 LHDISDEPVCMSPFSFDFEQHALTEGQMKELIYQEALAFNPEY 352
            LHD +DEP+C  PFSF+FEQ  L E Q+KE+IYQEA+A NP Y
Sbjct:  327 LHDPNDEPICQKPFSFEFEQQPLDEEQIKEMIYQEAIALNPTY 369          
BLAST of CN184884 vs. ExPASy Swiss-Prot
Match: MPK6_ORYSJ (Mitogen-activated protein kinase 6 OS=Oryza sativa subsp. japonica GN=MPK6 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.824e-11
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = -2
Query:  227 SLHDISDEPVCMSPFSFDFEQHALTEGQMKELIYQEALAFNPE 355
            SLHDI++EP C +PFSFDFEQ + TE  +KELI++E+LAFNP+
Sbjct:  331 SLHDINEEPTCPAPFSFDFEQPSFTEEHIKELIWRESLAFNPD 373          
The following BLAST results are available for this feature:
BLAST of CN184884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MMK1_MEDSA1.280e-1891.30Mitogen-activated protein kinase homolog MMK1 OS=M... [more]
MAPK_PEA6.353e-1889.13Mitogen-activated protein kinase homolog D5 OS=Pis... [more]
NTF4_TOBAC3.153e-1786.67Mitogen-activated protein kinase homolog NTF4 OS=N... [more]
MPK1_ORYSJ1.565e-1684.44Mitogen-activated protein kinase 1 OS=Oryza sativa... [more]
MPK6_ARATH1.730e-1580.43Mitogen-activated protein kinase 6 OS=Arabidopsis ... [more]
MPK5_ORYSJ1.160e-1165.91Mitogen-activated protein kinase 5 OS=Oryza sativa... [more]
MPK5_ORYSI1.160e-1165.91Mitogen-activated protein kinase 5 OS=Oryza sativa... [more]
MPK2_ORYSJ3.376e-1169.77Mitogen-activated protein kinase 2 OS=Oryza sativa... [more]
MPK3_ARATH5.759e-1165.12Mitogen-activated protein kinase 3 OS=Arabidopsis ... [more]
MPK6_ORYSJ9.824e-1165.12Mitogen-activated protein kinase 6 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184884 ID=CN184884; Name=CN184884; organism=Citrus sinensis; type=EST; length=359bp
TTTTTTTGGCCACAATTAAGACAGCCAATACAAACACCATTACAAATACT
CTGGTCCTTGAATTCTGCCCATCATGATAAAATATTGCAACTCAATAGCC
ATCCCCTTTTTTGGATGTAACATGTATTTACATGAAGAACTCAATTCACC
GAAACATAAAACAGAGAAACAACACTATCAAAGCCACATTAAATAATCAG
CTCACAAGTTATTACTGCTGCCGATACTCAGGGTTGAATGCAAGAGCCTC
CTGATAGATTAACTCCTTCATCTGTCCTTCGGTCAGCGCATGCTGCTCGA
AGTCAAAGCTGAAGGGGCTCATGCAGACAGGCTCATCACTGATGTCATGC
AATGACCCC
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