CN184873

Overview
NameCN184873
Unique NameCN184873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:938..1604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.256e-37
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG---RNVCGVD 241
            A+GINA +MQTYIGGVSCPYICG++LDHGVL+VGYG+SGFAPIR K+KPYWIIKNSWGENWGENGYYKIC G   RN CGVD
Sbjct:  276 AIGINAAYMQTYIGGVSCPYICGRHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVD 357          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.142e-37
Identity = 65/79 (82.28%), Postives = 73/79 (92.41%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 241
            AV INA +MQTYIGGVSCPYIC + L+HGVL+VGYGS+G+APIR KEKPYW+IKNSWGENWGENGYYKIC GRN+CGVD
Sbjct:    4 AVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVD 82          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.535e-35
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 241
            AV INA +MQTYIGGVSCPYIC + L+HGVL+VGYG++G+AP RFKEKPYWIIKNSWGE WGENG+YKIC GRN+CGVD
Sbjct:  275 AVAINAGYMQTYIGGVSCPYICTRRLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVD 353          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.834e-35
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 241
            AV INA +MQTYIGGVSCPYIC + L+HGVL+VGYGS+GF+  R KEKPYWIIKNSWGE+WGENG+YKIC GRN+CGVD
Sbjct:  272 AVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVD 350          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.895e-34
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 241
            AV INA WMQTY+ GVSCPY+C K  LDHGVL+VG+G   +APIR KEKPYWIIKNSWG+NWGE GYYKIC GRNVCGVD
Sbjct:  271 AVAINAAWMQTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVD 350          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.861e-19
Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPY--ICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 238
            ++GINA  MQ Y GGVS P+  +C K  LDHGVL+VGYG S + P   K  PYWI+KNSWG  WGE GYY++  G N CGV
Sbjct:  525 SIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDY-PNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGV 604          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPY--ICGKYL-DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 241
            +VG+NA+ +Q Y  G+S P+   C KYL DH VL+VGYG S       K +P+WI+KNSWG  WGENGY+++  G   CG++
Sbjct:  235 SVGMNALLLQFYQHGISHPWWIFCSKYLLDHAVLLVGYGVSE------KNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGIN 310          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.677e-14
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 238
            A+  +AV  Q YIGGV         LDHG+LIVGY +     I  K  PYWI+KNSWG +WGE GY  +  G+N CGV
Sbjct:  259 AIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKN--TIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGV 334          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPY--ICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 241
            +V INA  MQ Y  G++ P+  +C   ++DH VL+VGYG+           PYW IKNSWG +WGE GYY +  G   CGV+
Sbjct:  379 SVAINAFGMQFYRHGIAHPFRPLCSPWFIDHAVLLVGYGNRS-------NIPYWAIKNSWGSDWGEEGYYYLYRGSGACGVN 453          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPY--ICGKYL-DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 241
            +V INA  MQ Y  G+S P   +C  +L DH VL+VGYG+         + P+W IKNSWG +WGE GYY +  G   CGV+
Sbjct:  401 SVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRS-------DVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVN 475          
The following BLAST results are available for this feature:
BLAST of CN184873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CYSP1_MAIZE1.256e-3782.93Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
PAPA5_CARPA2.142e-3782.28Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
RD19A_ARATH1.535e-3579.75Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
A494_ARATH5.834e-3578.48Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP_PEA2.895e-3477.50Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CPR1_DROME5.861e-1958.02Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CATL_SCHMA7.921e-1648.78Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CYSP1_DICDI5.677e-1450.00Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATF_MOUSE2.817e-1345.12Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CATF_HUMAN6.276e-1346.34Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006E07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184873 ID=CN184873; Name=CN184873; organism=Citrus sinensis; type=EST; length=667bp
GAGGGCAGTGGGTATCAATGCCGTTTGGATGCAAACATATATTGGAGGAG
TTTCATGCCCATACATTTGCGGGAAGTATTTGGATCATGGAGTGCTTATC
GTGGGCTATGGATCTTCAGGTTTCGCCCCGATCCGTTTCAAGGAGAAGCC
TTACTGGATCATAAAGAACTCCTGGGGAGAGAACTGGGGAGAGAATGGAT
ATTATAAGATCTGCATGGGTCGCAATGTCTGTGGGGTCGACTCCATGGTC
TCATCTGTAGCTGCTGTCCATACAACCTCAAGCTAGACATTATGGAGGTT
GTGCTAGGCAAGTGGAGCTTATATACGAAGATATTATAGGATATCCTTTT
AAATAGCCGTCTGCAATTATAAGGATGCCTACATGCGTGGGCTGAGGCAT
GAACTTTATATGCTCTTGTAATATTTAAGCATATGTCATGTCAGAATGTA
ATATTTATCCATTTTATAGTTAACCATGCTACAGAATTGTTATTGAAGAT
GGTATTAATATTTTCTTTTTATATTGGGCAGGCTTGTAGAAATATTATAA
TGTTATATTTTCTTTTTATGTAACTCAAAATAGTAGAACTTCACGTATGC
TTAGACGCTTGTATTTTCTTATTATATTTGAAGTTAGCTCTATTTAGCTC
TGTTCATATTAAAAAAA
back to top