CN184872

Overview
NameCN184872
Unique NameCN184872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184872 vs. ExPASy Swiss-Prot
Match: FTCD_RAT (Formimidoyltransferase-cyclodeaminase OS=Rattus norvegicus GN=Ftcd PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 62/213 (29.11%), Postives = 94/213 (44.13%), Query Frame = 2
Query:   35 IAMADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG-LVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDV 646
            ++ A  A   I++  H G HPR+G +D   F P+   S+DE    AKA    +     VPV+LY  AA  P+ + L  IR   G Y       + A W         P+ GP    P+ G  + GAR ++  +NI ++ST   A  RIA  +  +G      G L  VQ +G  +  ++  +++  LL+        V     + A E  L V
Sbjct:   63 LSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELNVPVYLYGEAAQMPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATVTGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLDFEVTALHTVYEEARREAQELNLPV 264          
BLAST of CN184872 vs. ExPASy Swiss-Prot
Match: FTCD_PIG (Formimidoyltransferase-cyclodeaminase OS=Sus scrofa GN=FTCD PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 60/208 (28.85%), Postives = 88/208 (42.31%), Query Frame = 2
Query:   44 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHGEDS-TEIACMLLEPNQVGADRVQNRVEKLAAEEGLDV 646
            A AAY  I++  H G HPR+G +D   F P+   ++DE    A+A    +     VPV+LY  A  T           G Y       + A W         P+ GP    P+ G  + GAR ++  +NI ++ST   A  RIA  +  +G      G L  VQ +G    E +  +++  LL+    G   V     + A E  L V
Sbjct:   66 ARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVYLYGEAARTAGRQSLPALRAGEYEALPEKLKQAEWA--------PDFGPSAFVPSWGATVAGARKFLLAFNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDFEVTGLHTVFEETCREAQELSLPV 264          
BLAST of CN184872 vs. ExPASy Swiss-Prot
Match: FTCD_MOUSE (Formimidoyltransferase-cyclodeaminase OS=Mus musculus GN=Ftcd PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 64/230 (27.83%), Postives = 100/230 (43.48%), Query Frame = 2
Query:    2 RAIYSPLRQTIIAMADAAYGA------INLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG-LVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDV 646
            R +Y+ + Q    +  A + A      I++  H G HPR+G +D   F P+   S++E    AKA    +     VPV+LY  AA  P+ + L  IR   G Y       + A W         P+ GP    P+ G  + GAR ++  +NI ++ST   A  RIA  +  +G      G L  VQ +G  +  ++  +++  LL+        V     + A E  L V
Sbjct:   46 RTVYTFVGQPECVVEGALHAARTASQLIDMSKHKGEHPRMGALDVCPFIPVRGVSMEECVLCAKAFGQRLAEELNVPVYLYGEAAQTPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATVTGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLDFEVTALHTVFEEARREAQELNLPV 264          
The following BLAST results are available for this feature:
BLAST of CN184872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FTCD_RAT5.970e-1229.11Formimidoyltransferase-cyclodeaminase OS=Rattus no... [more]
FTCD_PIG3.870e-1128.85Formimidoyltransferase-cyclodeaminase OS=Sus scrof... [more]
FTCD_MOUSE3.870e-1127.83Formimidoyltransferase-cyclodeaminase OS=Mus muscu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184872 ID=CN184872; Name=CN184872; organism=Citrus sinensis; type=EST; length=712bp
GAGGGCAATATATAGTCCATTGCGGCAAACAATTATAGCCATGGCTGATG
CTGCTTATGGAGCCATAAACCTTGAGACACACTCTGGGGCTCACCCTCGG
CTTGGTGTTGTTGATGACATTGTTTTTCATCCATTGGCTCGGGCATCATT
AGATGAAGCAGCTTGGCTTGCTAAAGCAGTGGCAGCAGATATTGGCAGTA
GATTTCAAGTGCCAGTATTTTTGTACGCAGCAGCCCACCCAACAGGCAAG
CCCCTGGATACGATCAGGCGTGAGCTGGGTTACTACAGGCCTAACTCTAT
GGGCAACCAATGGGCAGGTTGGACAATGCCCGAAATCCTCCCGGAGAGAC
CCAATGAAGGCCCAATTCAGGTGTCTCCAGCCAGAGGCATTGCAATGATC
GGAGCACGTCCATGGGTTGCATTGTACAACATACCTATCATGTCCACGGA
TGTCGCTGCCACTCGTCGGATAGCTCGTATGGTGAGTGCTCGGGGTGGCG
GACTGCCAACAGTTCAAACATTGGGCTTGGTTCATGGTGAGGACTCAACT
GAGATAGCTTGCATGCTCTTGGAGCCCAACCAGGTAGGAGCGGATAGAGT
CCAGAACCGGGTAGAGAAGCTGGCAGCTGAAGAAGGGTTGGATGTAGAGA
AGGGCTACTTCACTGATTTTTCACCAGAAATGATTGTTGAAAAGTACATG
AATTTGATTAAT
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