CN184867

Overview
NameCN184867
Unique NameCN184867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184867 vs. ExPASy Swiss-Prot
Match: SF3B2_HUMAN (Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16
Identity = 55/142 (38.73%), Postives = 84/142 (59.15%), Query Frame = -3 
Query:  370 GIQSVDTLSSTPTGVETPDVIDLRKQQRKEP----ERP-LYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVDLLRGQKTDRVDVTLQPEELEVMDNVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQE 780
            G+ +    SS P G+ETP++I+LRK++ +E     E P L+ VL EK      G ++G+TH Y ++T    K  A     L+G     V+V L PEELE+    +  KYEE   E++ + ++EDFSDMVAE+  K+K+K ++
Sbjct:  721 GLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPE---LQG-----VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRK 854
The following BLAST results are available for this feature:
BLAST of CN184867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SF3B2_HUMAN1.960e-1638.73Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184867 ID=CN184867; Name=CN184867; organism=Citrus sinensis; type=EST; length=881bp
GAGGCTCAAATCTGTCAAACATGTATTAACACCTAATCTTAAATCACATG
GCCAAACTATGCTAACCGGTAACCTCTGGCTATCACAACTGGTACATATA
TTTATATCCCAAATCACATAGCAAAACTATGTTAACTGGTAGATGAATCA
AGACAATTTTTAACACAAATTTGTTTTTTTCAAGATATTAGCAATTACTC
ATTTTCTGATAACAAGTGAGCTCAGATGAAAACAAAACTTGCGCTGCACG
TTGACGATGTCTTCTGCCTCAACCCTAACACAGACAGACGGTTGGCATTT
CCTAGCATCAGTAACACAATTGTCAGCTGTCTAAAATTTGAAATCCTTCT
TCTTTGACTTTCCATCCTTCTCCTGCATCTTACGCTTCCTCTTCTTCTCA
TTCTCTGCAACCATGTCACTGAAATCCTCACGCTGACTCCGCAGCTTCTC
CTCCTCTCTTGCTTCCTCATATTTTGCAGGCAGTACATTGTCCATAACTT
CAAGCTCTTCCGGCTGCAAGGTAACATCAACTCTATCCGTCTTCTGGCCT
CTAAGCAGATCAACCCTTTTAGCTCCTGCTTTGTCTTGTGTGCCGGTGTT
GACCACATAAGTGTGTGTTGTTCCAAGTAATGTCCCAGGAGCAATCCTCT
CCTCTTTTTCCTCAAGAACTTGGTATAGAGGCCTCTCAGGTTCCTTCCTC
TGCTGCTTACGAAGGTCAATAACATCAGGTGTTTCAACACCAGTGGGAGT
ACTTGAAAGAGTATCAACTGATTGAATCCCATCCTCCAACTCTTCTTCCT
CAATTTGTTCTTCCTCTTCCTCTTCCTCTTCTTCCTCTTCCTCTTCCTCC
AATCACCCCAATGCTTCGACTTATCAACTGG
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