CN184858

Overview
NameCN184858
Unique NameCN184858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6171 contig Csv1_Contig6171:12..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184858 vs. ExPASy Swiss-Prot
Match: CHLG_AVESA (Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.266e-62
Identity = 110/135 (81.48%), Postives = 118/135 (87.41%), Query Frame = 1
Query:  301 PDKAPAASGSSFNQLLGIKGAARETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWA 705
            PDKAPAA GSSFNQLLGIKGA +ETN WKIRLQLTKPVTWPPL+WG++CGAAASGNFHW +EDV KSIVCM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISENEVITQIWV            D+WA
Sbjct:   62 PDKAPAA-GSSFNQLLGIKGAKQETNIWKIRLQLTKPVTWPPLVWGVLCGAAASGNFHWTVEDVTKSIVCMLMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLGALLDIWA 195          
BLAST of CN184858 vs. ExPASy Swiss-Prot
Match: CHLG_ARATH (Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.396e-61
Identity = 110/141 (78.01%), Postives = 120/141 (85.11%), Query Frame = 1
Query:  283 KLNRRAPDKAPAASGSSFNQLLGIKGAARETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWA 705
            K+  + PDKAPA  GSS NQLLGIKGA++ETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHW  EDVAKSI+CM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISE EVITQ+WV            DVWA
Sbjct:   65 KVKSQTPDKAPAG-GSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGIAGILDVWA 204          
BLAST of CN184858 vs. ExPASy Swiss-Prot
Match: CHLG_ORYSJ (Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLG PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.182e-60
Identity = 109/136 (80.15%), Postives = 117/136 (86.03%), Query Frame = 1
Query:  298 APDKAPAASGSSFNQLLGIKGAARETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWA 705
            AP+KAPA  GSSFNQLLGIKGA +E + WKIRLQLTKPVTWPPL+WG++CGAAASGNFHW +EDVAKSIVCMIMSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISENEVITQIW             DVWA
Sbjct:   59 APEKAPAG-GSSFNQLLGIKGAKQENDIWKIRLQLTKPVTWPPLVWGVLCGAAASGNFHWTVEDVAKSIVCMIMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISENEVITQIWALLLAGLGLGALLDVWA 193          
BLAST of CN184858 vs. ExPASy Swiss-Prot
Match: BCHG_CHLAA (Bacteriochlorophyll synthase 34 kDa chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=bchG PE=4 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  382 WKIR-LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEV 639
            W +R +QL KPVTW    W  +CGA ASG   WN E + + ++ M M+GP L G +Q +ND+ DRE+DAINEP+R IPSG +S   V
Sbjct:   28 WLVRSIQLMKPVTWFAPTWAFMCGAIASGALGWN-ESIGRLLLGMFMAGPILCGLSQVVNDYADREVDAINEPHRLIPSGQVSLRHV 113          
BLAST of CN184858 vs. ExPASy Swiss-Prot
Match: BCHG_RHOCA (Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus GN=bchG PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  394 LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAI 624
            L+L KPVTW P +W  +CGA +S    W  + V   ++ ++++GP + G +Q  NDW DR +DAINEP+RPIPSG I
Sbjct:   20 LELIKPVTWFPPMWAYLCGAVSSNVPIWENKGVV--VLGIVLAGPIVCGMSQAANDWCDRHVDAINEPHRPIPSGRI 94          
BLAST of CN184858 vs. ExPASy Swiss-Prot
Match: BCHG_RHOS4 (Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:  394 LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAI 624
            L+L +P+TW P IW  +CG  + G   W  E     ++ M+++GP + G +Q  N+W DR +DA+NEP RPIPSG I
Sbjct:   19 LELIQPITWFPPIWAYLCGTVSVGI--WPGEKWPLVLLGMVLAGPLVCGMSQAANNWCDRHVDAVNEPDRPIPSGRI 93          
The following BLAST results are available for this feature:
BLAST of CN184858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CHLG_AVESA6.266e-6281.48Chlorophyll synthase, chloroplastic OS=Avena sativ... [more]
CHLG_ARATH1.396e-6178.01Chlorophyll synthase, chloroplastic OS=Arabidopsis... [more]
CHLG_ORYSJ1.182e-6080.15Chlorophyll synthase, chloroplastic OS=Oryza sativ... [more]
BCHG_CHLAA4.252e-1850.57Bacteriochlorophyll synthase 34 kDa chain OS=Chlor... [more]
BCHG_RHOCA3.369e-1548.05Bacteriochlorophyll synthase 33 kDa chain OS=Rhodo... [more]
BCHG_RHOS44.118e-1344.16Bacteriochlorophyll synthase 33 kDa chain OS=Rhodo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184858 ID=CN184858; Name=CN184858; organism=Citrus sinensis; type=EST; length=706bp
GGCCTCGTGCCGCAAACTTATCTCCCTTACTTTCACAGTTCTTTCCACTT
GATTTCGATTAGAGTCAACGCTCCACCTTCGCTTCAGTTCCCACTAAAAA
CGAGAAAGAAAAAAAGTTAAAATTTCAAATGTCGTCTGTGTTTAGAACAC
GGTTTTATCCACAAGATTATCCGACGTCGAATCCATCAAGCGAGTTCGAA
CCCGGCGCAGTTCTATCACCCGTTTCGGGTTCATTTTCCAGGCGGAGACT
GACGGTGAGAGCACAGGAGCCTAATGCAAATGAAGTTAAACCGCAGAGCA
CCCGATAAAGCCCCGGCTGCTAGTGGATCGAGCTTCAATCAGCTTCTTGG
CATTAAGGGAGCTGCACGAGAAACTAATAAATGGAAGATTCGTCTTCAAC
TAACAAAGCCTGTTACCTGGCCTCCGTTGATTTGGGGAATAGTTTGTGGT
GCTGCTGCTTCTGGAAACTTTCACTGGAATTTGGAGGATGTTGCTAAATC
AATTGTCTGTATGATCATGTCTGGCCCGTGTCTCACTGGCTACACACAGA
CGATTAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCCTAT
CGTCCAATTCCTTCAGGTGCAATATCTGAGAATGAGGTCATTACCCAGAT
CTGGGTTTTACTGCTAGCAGGCCTTGGATTAGCTGGTTTATTAGACGTGT
GGGCAG
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