CN184852

Overview
NameCN184852
Unique NameCN184852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184852 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.071e-20
Identity = 77/217 (35.48%), Postives = 117/217 (53.92%), Query Frame = -1 
Query:  133 LREISIEECGNLVSFPEGGLPCAKLTGLVIFNCERLEALPKGLHNLTSLQELRIKGGDLPSLE--EDDGLPTNLHSLHIRGNMEIWKSMIERGR-GFHRFSSLRELIIDGCDDDMVSFPLEDKRLGTVLPLPATLTSLRIEDFPNLERLS-SSIVDLRNLTELVLRGCPKLKYFPEKGLPSSLLQLYIWSCPLITEKCRKDGGQYWDLLTHIPFVAI 771
            L  + I +C NL +FP+GGLP  KL+ +++ NC++L+ALP+ L  LTSL  L I     P +E     G P+NL +L I     +   +  R   G     +LR L IDG ++D+ SFP E         LP ++ SLRI  F NL+ L+     D + +  + + GC KL+   ++ LP  L  L I SC L+TE   +   +++ +L +IP+V I
Sbjct: 1217 LESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFII--KCPEIETIPGGGFPSNLRTLCI----SLCDKLTPRIEWGLRDLENLRNLEIDGGNEDIESFPEEGL-------LPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLP-PLSCLRISSCSLLTETFAEVETEFFKVL-NIPYVEI 1418
The following BLAST results are available for this feature:
BLAST of CN184852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DRL21_ARATH1.071e-2035.48Putative disease resistance protein At3g14460 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184852 ID=CN184852; Name=CN184852; organism=Citrus sinensis; type=EST; length=777bp
GAGGTTTCAATTGAGATTTGAATTTTAAAATTACATACACATACACACCC
GATTTAAAAAAATAATAATAACTCTAACAATAAAATATTTCAGCCGTCCT
CTGTTCAATCACCAAAAACTCATTTGTCATCTAATAGCAACAAAAGGTAT
ATGGGTTAACAAGTCCCAATATTGTCCTCCATCCTTTCTGCACTTCTCTG
TTATCAACGGACAACTCCAGATGTATAATTGCAAAAGTGAGGAAGGCAGG
CCCTTCTCCGGAAAGTATTTGAGCTTGGGACATCCCCGGAGAACCAATTC
AGTGAGGTTTCGAAGATCAACAATTGAAGAAGATAGGCGTTCCAGATTTG
GAAAATCTTCAATCCGCAGAGATGTTAGAGTGGCAGGAAGAGGAAGCACG
GTCCCTAATCTTTTGTCCTCTAGTGGAAATGACACCATGTCGTCATCGCA
TCCGTCGATTATGAGTTCTCGCAGAGAGGAGAATCTGTGAAATCCCCGTC
CCCGCTCAATCATTGACTTCCAAATCTCCATATTACCCCGAATATGAAGT
GAATGAAGGTTGGTGGGAAGGCCATCATCTTCTTCAAGGCTTGGAAGGTC
ACCTCCTTTTATTCTTAATTCTTGAAGAGAGGTCAGATTGTGCAATCCCT
TGGGTAAGGCCTCTAGTCTCTCACAATTAAATATCACCAGCCCCGTGAGT
TTCGCACAAGGCAATCCCCCTTCGGGAAAGGACACCAGATTTCCACATTC
CTCTATGCTAATCTCTCGAAGCTGGCG
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