CN184846

Overview
NameCN184846
Unique NameCN184846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig672 contig Csv1_Contig672:56..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 3.627e-83
Identity = 149/176 (84.66%), Postives = 162/176 (92.05%), Query Frame = 3
Query:   75 MDLKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            MDL ++   APHSMGTTIIGVTYNGGVVLGADSRTSTG+YVANRASDKITQLTDNVY+CRSGSAADSQ VSDYVRYFLHQHTIQ GQPATVKV+ANL+R+L+YNNKN LQTG+IVGGWDKYEGGKIYG+PLGGT++EQPFAI      YLYGFFDQAWK+ MTKEEAEQLVVKAVS
Sbjct:    1 MDLNLD---APHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVS 173          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 8.933e-82
Identity = 147/170 (86.47%), Postives = 157/170 (92.35%), Query Frame = 3
Query:   93 DFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            D + PHSMGTTIIGVTYNGGVVLGADSRTSTG+YVANRASDKITQLTDNVY+CRSGSAADSQ VSDYVRYFLHQHTIQLGQPATVKVAANL RLLSYNNK+ LQTGMI+GGWDKYEGGKIYG+P GGT++EQPFAI      YLYGFFDQAWKEGMT+EEAE+LVV AVS
Sbjct:    5 DVDQPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVS 174          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.219e-46
Identity = 83/163 (50.92%), Postives = 120/163 (73.62%), Query Frame = 3
Query:  114 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            +GT+I+ V Y+GGV++GADSRT+TG Y+ANR ++KIT + + +Y CRSGSAAD+Q +SDYVRY+L  HT +L     VK AA+L +LL Y+NKN L  G+IV GWDK++GG +Y + LGG++++QPFAI      Y+YG+ D  +K  MTK+E  + V  +++
Sbjct:   13 LGTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLA 175          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.319e-44
Identity = 83/168 (49.40%), Postives = 115/168 (68.45%), Query Frame = 3
Query:   99 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            N   S GTTI+ V ++GGVVLGADSRT+TG Y+ANR +DK+T + D ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ QPFAI      Y+YG+ D  ++EGMTKEE  Q    A++
Sbjct:   28 NREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALA 195          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.261e-43
Identity = 82/168 (48.81%), Postives = 115/168 (68.45%), Query Frame = 3
Query:   99 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            N   S GTTI+ V +NGGVVLGADSRT+TG Y+ANR +DK+T + D+++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ Q FAI      Y+YG+ D  ++EGMTK+E  Q    A++
Sbjct:   27 NREVSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALA 194          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.669e-43
Identity = 81/163 (49.69%), Postives = 113/163 (69.33%), Query Frame = 3
Query:  114 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            MGTTI  + Y  GV+L ADSRT+ G Y+ANR +DK+TQLTDN++ CRSGSAAD+QTV+D ++Y+L  + IQ G   +V  AA L   + Y NKN L  G+IV G+D+  GG +Y +PLGG++ +QP AI      ++YGF D  ++E MT+EEA + +  AV+
Sbjct:   23 MGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVA 185          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4)

HSP 1 Score: 174.481 bits (441), Expect = 3.669e-43
Identity = 81/164 (49.39%), Postives = 113/164 (68.90%), Query Frame = 3
Query:  111 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            S GTTI+ V ++GGVVLGADSRT+TG Y+ANR +DK+T + D ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ Q FAI      Y+YG+ D  ++EGMTKEE  Q    A++
Sbjct:   32 STGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALA 195          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 4.792e-43
Identity = 81/168 (48.21%), Postives = 115/168 (68.45%), Query Frame = 3
Query:   99 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            N   S GTTI+ V ++GGVVLGADSRT+TG Y+ANR +DK+T + D+++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ Q FAI      Y+YG+ D  ++EGMTK+E  Q    A++
Sbjct:   27 NREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALA 194          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.641e-38
Identity = 73/164 (44.51%), Postives = 116/164 (70.73%), Query Frame = 3
Query:  111 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            S+GT+I+ VT+  GV+LGADSRT+TG Y+ANR +DK+T++ D ++ CRSGSAAD+Q ++D V+Y L  +T Q G P+T + AA++ + L Y NK+ L  G+IV G+D    G++Y +PLGG++ + P+AI      ++YG+ D+ ++E M+KEE    +  ++S
Sbjct:   17 SLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLS 179          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.674e-36
Identity = 73/162 (45.06%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  117 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            GTTII + +NGGVVLG+DSR S G  V NR  +K++ L D +Y   SGSAAD+QT+++ V Y L  H++++ +   V+ AA LV+ +SY  K  L   +IV GWD+ +GG+++   LGG +  QPFAI      Y+YGF D  ++ GMTKEE ++ VV  ++
Sbjct:   18 GTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFAT-LGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLA 178          
The following BLAST results are available for this feature:
BLAST of CN184846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PSB6_ARATH3.627e-8384.66Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB6_TOBAC8.933e-8286.47Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]
PSB6_DICDI1.219e-4650.92Proteasome subunit beta type-6 OS=Dictyostelium di... [more]
PSB6_BOVIN3.319e-4449.40Proteasome subunit beta type-6 OS=Bos taurus GN=PS... [more]
PSB6_MOUSE1.261e-4348.81Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]
PSB6_SCHPO3.669e-4349.69Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB6_HUMAN3.669e-4349.39Proteasome subunit beta type-6 OS=Homo sapiens GN=... [more]
PSB6_RAT4.792e-4348.21Proteasome subunit beta type-6 OS=Rattus norvegicu... [more]
PSB6_YEAST4.641e-3844.51Proteasome component PRE3 OS=Saccharomyces cerevis... [more]
PSB9_ORYLA5.674e-3645.06Proteasome subunit beta type-9 OS=Oryzias latipes ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184846 ID=CN184846; Name=CN184846; organism=Citrus sinensis; type=EST; length=604bp
GAGGAAATTAAACTCAAAATTAAAATTGTTAAGGGCATTTAGAAATTGTG
GTAAGTGAGTGTTTTAGAGGAAAGATGGATCTGAAGATGGAAGATTTTAA
CGCGCCACACTCGATGGGTACTACTATCATCGGCGTCACTTACAACGGCG
GCGTTGTCCTCGGCGCCGATTCTCGTACTAGCACCGGGGTGTATGTTGCT
AACCGAGCTTCAGACAAGATTACGCAGCTCACTGATAATGTCTACCTTTG
CCGCTCGGGATCGGCTGCAGATTCTCAGACTGTCTCCGACTATGTTCGCT
ACTTCCTTCATCAACACACGATACAGCTAGGGCAGCCTGCAACTGTTAAA
GTTGCTGCCAATCTTGTCAGGCTGCTATCCTACAATAACAAGAACTTTTT
GCAAACTGGAATGATTGTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAA
TATATGGAGTTCCTCTTGGAGGAACAATAATTGAGCAGCCTTTTGCAATT
GGAGGATCTGGCTCAAGTTACCTGTATGGGTTTTTTGATCAGGCATGGAA
AGAGGGAATGACCAAGGAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTT
CTCT
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