CN184839

Overview
NameCN184839
Unique NameCN184839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2425 contig Csv1_Contig2425:324..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN184839 vs. ExPASy Swiss-Prot
Match: PTR1_LEITA (Pteridine reductase 1 OS=Leishmania tarentolae GN=PTR1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 45/146 (30.82%), Postives = 78/146 (53.42%), Query Frame = 1 
Query:   94 NFVAPWFLLKAVGRRMKESKA---GGSIVFLTSIIGAERGLYPXXXXXXXXXXSIHQLVRTAAMEIGKHKIRVNGIARGLH-LQDEYPIAVGQERAVKLVKEAAPLHRWLDVKNDLASTVIYLISDGSRYMTGTTIYVDGAQSITR 519
            N +AP+FL+KA  +R+ +++A   G S   +  +                   ++  L R+AA+E+   +IRVNG++ GL  L D+ P +V ++   K+     PL++      +++  VI+L S  ++Y+TGT I VDG  S+TR
Sbjct:  148 NAIAPYFLIKAFAQRVADTRAEQRGTSYSIVNMVDAMTSQPLLGYTMYTMAKEALEGLTRSAALELASLQIRVNGVSPGLSVLPDDMPFSVQEDYRRKV-----PLYQRNSSAEEVSDVVIFLCSPKAKYITGTCIKVDGGYSLTR 288
The following BLAST results are available for this feature:
BLAST of CN184839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PTR1_LEITA5.054e-1130.82Pteridine reductase 1 OS=Leishmania tarentolae GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184839 ID=CN184839; Name=CN184839; organism=Citrus sinensis; type=EST; length=713bp
GGGCAAACTTATGACTTCTGATCTTGTGAAACAGGAAAAATGCAAGACCC
TCTACAAGTAGGCGAGGATGAGTTCAAAAAGTTAGTGAAAATTAATTTTG
TAGCTCCATGGTTCCTGTTAAAGGCTGTTGGCAGAAGAATGAAAGAGTCT
AAGGCAGGAGGTTCCATTGTATTCTTGACCTCAATAATTGGAGCTGAGAG
AGGACTTTATCCTGGAGCTGCTGCCTATGGTGCATGTGCAGCAAGTATCC
ATCAGTTAGTTAGGACAGCCGCAATGGAGATTGGGAAACACAAGATCCGG
GTTAATGGTATTGCCCGTGGCTTGCATCTGCAAGACGAATATCCAATTGC
AGTGGGCCAGGAGAGGGCAGTGAAGTTGGTCAAGGAGGCGGCACCACTGC
ACAGATGGCTGGACGTTAAAAATGATCTGGCTTCGACGGTCATCTACTTA
ATCAGTGATGGTTCACGCTATATGACTGGTACAACCATATACGTAGACGG
GGCACAGTCTATAACCAGGCCGCGGATGCGATCTTACATGTGATTCTCAA
TAACTTTATTTCATTATTGTTAATGCAACAAGGGTTGTTAGTAGAATAGC
AATTTATAATTTATTTCTCTAGGAAAAAATAACCTTAGCCTTTGCCAGTT
CTATGTTAGTTAGCGGAAAGGTGACTAAAATTGTTTAAAAGTTCAATCAT
AATTTGTTTTATA
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