CN184835

Overview
NameCN184835
Unique NameCN184835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10420 contig Csv1_Contig10420:28..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184835 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.011e-56
Identity = 105/189 (55.56%), Postives = 134/189 (70.90%), Query Frame = 3
Query:  216 PTFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGERTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEG-KDVSLSELEYIHVHKTAKLLEAS 779
            P+F F+ YM  K   +++AL+ A+P+Q P KIHE+MRYSLLAGGKR+RP LC+A+CELVGG++S+ MP ACA+EM HTMSLIHDDLP +DNDDLRRGKPTNH VFGE              FEH+A  T+ VS+ R+VRA+               QV D++SEG  +V L +LE+IH+HKTAKLLE +
Sbjct:   75 PSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGA 263          
BLAST of CN184835 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 4.250e-55
Identity = 113/192 (58.85%), Postives = 132/192 (68.75%), Query Frame = 3
Query:  219 TFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGERTXXXXXXXXXXXXFEHVAAKTVG--VSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEAS 779
            +F F  Y+ +K+  V+KALD A+P++ P KIHEAMRYSLLAGGKR+RPVLCIA+CELVGG+ES  MP ACA+EM HTMSLIHDDLP +DNDDLRRGKPTNHKVFGE              FEH+A+ T    VS  RVVRA+               QV D+ SEG    DV L  LE+IH+HKTA LLEAS
Sbjct:   73 SFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEAS 264          
BLAST of CN184835 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.236e-54
Identity = 106/188 (56.38%), Postives = 131/188 (69.68%), Query Frame = 3
Query:  219 TFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGERTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEG-KDVSLSELEYIHVHKTAKLLEAS 779
            +F F+ YM  K+  V+KAL++A+ ++ P KIHE+MRYSLLAGGKR+RP+LCIA+CEL GG ES+ MP ACA+EM HTMSL+HDDLP +DNDDLRRGKPTNHKVFGE              FEH+A  T GVS++R+VR +               QV D+ SEG  DV L  LE+IH+HKTA LLE S
Sbjct:   63 SFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGS 250          
BLAST of CN184835 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.755e-54
Identity = 112/197 (56.85%), Postives = 134/197 (68.02%), Query Frame = 3
Query:  201 VKIALPTFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGERTXXXXXXXXXXXXFEHVAAKTVG-VSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEAS 779
            +K +  +F F  Y+  K+  V+KALD A+P++ P KIHEAMRYSLLAGGKR+RPVLCIA+CELVGG+ESL MP  CA+EM HTMSLIHDDLP +DNDDLRRGKPTNHKV+GE              FEH+A+ T   VS  RVVRA+               QV D+ SEG D   V L  L++IH+HKTA LLEAS
Sbjct:   63 LKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEAS 259          
BLAST of CN184835 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.398e-52
Identity = 116/256 (45.31%), Postives = 149/256 (58.20%), Query Frame = 3
Query:   36 SALLKNSPLNY--FKMPFMIPFPNLKPFPMKN-----NACHAENLASVKPSQGAESIMNIKPVKIALPTFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGERTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEAS 779
            + L+ N  L+Y  F     IP  N K  P  N     +      +A+ K  +  E+    +P       F F+ Y+T K+  V+KALDEA+ ++ P  IHEAMRYSLLAGGKR+RP+LC+A+CELVGG++   M  ACA+EM HTMSLIHDDLP +DNDDLRRGKPTNHK++GE              FEH+   T GV+  R+V A+               QV D+   G   VSL  LE+IHVHKTA LLE+S
Sbjct:   14 ACLVFNQTLSYKSFNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEP-------FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESS 262          
BLAST of CN184835 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.083e-50
Identity = 102/190 (53.68%), Postives = 127/190 (66.84%), Query Frame = 3
Query:  219 TFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGERTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEAS 779
            TF+F+ YM SK+  V+KAL+EA+P+  P KIHEAMRY++LA GKR+RP+LC+ASCELVGG E+  MP ACA+EM HTMSLI DDLP +DNDDLRRGKPT HKV+GE              FEH+   T  +S++R+V A+               Q  D+ SEG D   V L  LE+IHVHKTA LLE +
Sbjct:   82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMT--TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETA 269          
BLAST of CN184835 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.152e-50
Identity = 101/190 (53.16%), Postives = 126/190 (66.32%), Query Frame = 3
Query:  219 TFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGERTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEAS 779
            +F F+ YM SK+  +++ALDEA+P+  P  IH+AMRY++LAGGKR+RP+LC+A+CELVGG+E L +  ACA+EM HTMSLI DDLP +DNDDLRRGKPT HKVFGE              FEH+      VS+ ++VRA+               Q  DL SEG    DV L +LEYIHVHKT  LLEAS
Sbjct:   78 SFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLT--EADVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEAS 265          
BLAST of CN184835 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.790e-45
Identity = 96/190 (50.53%), Postives = 123/190 (64.74%), Query Frame = 3
Query:  222 FQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGERTXXXXXXXXXXXXFEHVAAKTVG-VSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEAS 779
            F F+ YM  K+  V+ ALD ++P++ P  + EA+RYSLLAGGKR+RP+LCIA CELVGGDE+  M  ACA+EM HT SLIHDDLP +DN DLRRGKPTNHKV+GE              FEH+   + G V+ +R++RA+               Q+ DL SE  +   V L  LE+IH+HKTA LLEA+
Sbjct:   64 FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAA 253          
BLAST of CN184835 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.873e-43
Identity = 87/187 (46.52%), Postives = 115/187 (61.50%), Query Frame = 3
Query:  222 FQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGERTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEAS 779
            F    Y+  +   V+  L++++P  +P  I++++RYSL AGGKRIRP+LC+ASCEL GG   + +P ACALEM HTMSLIHDDLPA+DND  RRGKPTNH ++GE              FE +A +T  V  D +V+ I               Q+ DL SEGK D +L  L +IH+HKT  LLEA+
Sbjct:    8 FNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAA 194          
BLAST of CN184835 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.327e-40
Identity = 91/205 (44.39%), Postives = 124/205 (60.49%), Query Frame = 3
Query:  207 IALPTFQFEEYMTSKSRKVDKALDEALPM--------QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGERTXXXXXXXXXXXXFEHVAAKT-VGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSE-----GKDVSLSELEYIHVHKTAKLLEAS 779
            IA    +F  YM +K++ ++KALD ++P+        +   ++H+AMRY+LL GGKR+RP+LC+ +CELVGG ES  MP ACA+EM H  SLI DDLP +D+D LRRGKPTNHKVFGE+T             +   A T +GV+++RV+RA+               Q  DL  E      +D  L  LE +HVHKTA L+EA+
Sbjct:   25 IASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAA 229          
The following BLAST results are available for this feature:
BLAST of CN184835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GGPPS_HEVBR1.011e-5655.56Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH4.250e-5558.85Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CATRO1.236e-5456.38Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL2.755e-5456.85Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN4.398e-5245.31Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP2_ARATH1.083e-5053.68Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP4_ARATH3.152e-5053.16Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP3_ARATH1.790e-4550.53Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
CRTE_CYAPA4.873e-4346.52Geranylgeranyl pyrophosphate synthetase homolog OS... [more]
GGPP6_ARATH1.327e-4044.39Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184835 ID=CN184835; Name=CN184835; organism=Citrus sinensis; type=EST; length=820bp
GAGGCTTCTCAGCAACAATTCCTAGCTGTACCCATTCAGCTCTCCTCAAG
AACTCCCCACTCAATTATTTCAAAATGCCCTTTATGATCCCATTTCCGAA
CTTGAAACCCTTTCCCATGAAAAATAACGCCTGCCACGCTGAAAACTTAG
CTTCGGTAAAACCATCCCAGGGTGCAGAATCGATCATGAACATCAAGCCG
GTAAAGATAGCTCTACCAACTTTCCAGTTTGAAGAATACATGACCAGCAA
GTCGAGAAAAGTGGACAAAGCATTAGATGAGGCATTGCCCATGCAACATC
CAGAAAAAATACACGAGGCCATGAGATACTCTCTTCTTGCTGGAGGCAAG
CGTATCCGTCCTGTTCTATGCATTGCTTCATGCGAATTAGTAGGAGGAGA
TGAGTCCTTGGTGATGCCAATGGCTTGTGCACTAGAGATGACTCACACGA
TGTCCCTCATTCATGATGATCTCCCTGCACTGGACAACGATGATCTTAGA
CGAGGAAAGCCTACAAATCACAAAGTCTTTGGTGAACGAACCGCAATTCT
TGCAGGTGATGCTCTGCTTGCCCTTGCATTTGAACATGTAGCAGCCAAGA
CCGTTGGTGTGTCAACTGACCGCGTGGTTCGAGCCATTACGGAGCTGGGT
TCCGCACTTGGAGCAGAAGGGCTCCTGAAAGGACAAGTTACTGACCTTGA
CAGTGAAGGAAAGGATGTGAGTTTGAGTGAATTGGAGTACATTCATGTGC
ACAAAACCGCGAAGCTTTTAGAGGCATCTGTTGTTTGCGGAGTGATAATC
GGAGGAGGAAATGTGATTGA
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