CN184834
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 9.231e-33 Identity = 74/122 (60.66%), Postives = 88/122 (72.13%), Query Frame = -2 Query: 11 SLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 376 SL LE+IHVHKTA LLE+S +E++R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDL+ DK TYPKL+G+E AK+FA EL +A ++L F+ KAAPL LA YI Sbjct: 243 SLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYI 364
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.575e-32 Identity = 71/121 (58.68%), Postives = 90/121 (74.38%), Query Frame = -2 Query: 11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373 L +LE+IH+HKTAKLLE + +E++R YAR IGLLFQVVDDILDVTKSS LGKTAGKDL++DK TYPKL+GIE +++FA++L +A ++LA F+ KAAPL LA YI Sbjct: 245 LEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYI 365
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 4.581e-32 Identity = 71/121 (58.68%), Postives = 88/121 (72.73%), Query Frame = -2 Query: 11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373 L L++IH+HKTA LLEAS IER+R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDL++DK TYPKLMG+E +++FA++L ++A +L F+ K APL LA YI Sbjct: 241 LEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYI 361
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 4.581e-32 Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = -2 Query: 11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373 L LE+IH+HKTA LLE S I ++R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDL++DK TYPKL+GI+ +++FA++L +A ++LA F+ KAAPL LA YI Sbjct: 232 LEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYI 352
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 4.581e-32 Identity = 71/121 (58.68%), Postives = 87/121 (71.90%), Query Frame = -2 Query: 11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373 L LE+IH+HKTA LLEAS IER+R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDL++DK TYPK+MG+E +++FA++L +A +L F+ K APL LA YI Sbjct: 246 LEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYI 366
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.925e-30 Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = -2 Query: 11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373 L LE+IH+HKTA LLEA+ IE++R YARCIGLLFQVVDDILDVTKS+ LGKTAGKD+++ K TYP+L+G+E +K+ A++L +A ++L F+ SKAAPL LA YI Sbjct: 235 LEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYI 355
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 8.087e-29 Identity = 66/121 (54.55%), Postives = 81/121 (66.94%), Query Frame = -2 Query: 11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373 L +LEYIHVHKT LLEAS IE+VRN+ARCIGLLFQVVDDILD TKSS LGKTAGKD ++ K TYPK++G+E +K+F ++L A + L F+ K PL L +I Sbjct: 247 LEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFI 367
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 3.073e-28 Identity = 63/122 (51.64%), Postives = 84/122 (68.85%), Query Frame = -2 Query: 8 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYIV 373 L LE +HVHKTA L+EA+ IER+++YARC+GL+FQV+DD+LD TKSS LGKTAGKDL++ K TYPK+MG++NA+++A L +A + L F+ K PL LA YIV Sbjct: 211 LRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIV 332
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 4.437e-27 Identity = 66/121 (54.55%), Postives = 76/121 (62.81%), Query Frame = -2 Query: 11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373 L LE+IHVHKTA LLE + IE VR +ARCIGLLFQVVDDILD TKSS LGKTAGKD L+ K TYPKL+G+E +K+F L A + L F K APL L +I Sbjct: 251 LEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFI 371
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.806e-20 Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = -2 Query: 8 SLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYIV 376 +L L +IH+HKT LLEA+ + R YA+ IGL FQ++DD+LD+ + LGK+ GKDL + KATYP G+E + K A+ L +A +E+ YF+ +KA PL +A +IV Sbjct: 175 TLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIV 296 The following BLAST results are available for this feature:
BLAST of CN184834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184834 ID=CN184834; Name=CN184834; organism=Citrus sinensis; type=EST; length=377bpback to top |