CN184834

Overview
NameCN184834
Unique NameCN184834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10216 contig Csv1_Contig10216:38..414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.231e-33
Identity = 74/122 (60.66%), Postives = 88/122 (72.13%), Query Frame = -2
Query:   11 SLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 376
            SL  LE+IHVHKTA LLE+S              +E++R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDL+ DK TYPKL+G+E AK+FA EL  +A ++L  F+  KAAPL  LA YI
Sbjct:  243 SLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYI 364          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.575e-32
Identity = 71/121 (58.68%), Postives = 90/121 (74.38%), Query Frame = -2
Query:   11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373
            L +LE+IH+HKTAKLLE +              +E++R YAR IGLLFQVVDDILDVTKSS  LGKTAGKDL++DK TYPKL+GIE +++FA++L  +A ++LA F+  KAAPL  LA YI
Sbjct:  245 LEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYI 365          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.581e-32
Identity = 71/121 (58.68%), Postives = 88/121 (72.73%), Query Frame = -2
Query:   11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373
            L  L++IH+HKTA LLEAS              IER+R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDL++DK TYPKLMG+E +++FA++L ++A  +L  F+  K APL  LA YI
Sbjct:  241 LEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYI 361          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.581e-32
Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = -2
Query:   11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373
            L  LE+IH+HKTA LLE S              I ++R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDL++DK TYPKL+GI+ +++FA++L  +A ++LA F+  KAAPL  LA YI
Sbjct:  232 LEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYI 352          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 4.581e-32
Identity = 71/121 (58.68%), Postives = 87/121 (71.90%), Query Frame = -2
Query:   11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373
            L  LE+IH+HKTA LLEAS              IER+R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDL++DK TYPK+MG+E +++FA++L  +A  +L  F+  K APL  LA YI
Sbjct:  246 LEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYI 366          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.925e-30
Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = -2
Query:   11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373
            L  LE+IH+HKTA LLEA+              IE++R YARCIGLLFQVVDDILDVTKS+  LGKTAGKD+++ K TYP+L+G+E +K+ A++L  +A ++L  F+ SKAAPL  LA YI
Sbjct:  235 LEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYI 355          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.087e-29
Identity = 66/121 (54.55%), Postives = 81/121 (66.94%), Query Frame = -2
Query:   11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373
            L +LEYIHVHKT  LLEAS              IE+VRN+ARCIGLLFQVVDDILD TKSS  LGKTAGKD ++ K TYPK++G+E +K+F ++L   A + L  F+  K  PL  L  +I
Sbjct:  247 LEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFI 367          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.073e-28
Identity = 63/122 (51.64%), Postives = 84/122 (68.85%), Query Frame = -2
Query:    8 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYIV 373
            L  LE +HVHKTA L+EA+              IER+++YARC+GL+FQV+DD+LD TKSS  LGKTAGKDL++ K TYPK+MG++NA+++A  L  +A + L  F+  K  PL  LA YIV
Sbjct:  211 LRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIV 332          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.437e-27
Identity = 66/121 (54.55%), Postives = 76/121 (62.81%), Query Frame = -2
Query:   11 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 373
            L  LE+IHVHKTA LLE +              IE VR +ARCIGLLFQVVDDILD TKSS  LGKTAGKD L+ K TYPKL+G+E +K+F   L   A + L  F   K APL  L  +I
Sbjct:  251 LEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFI 371          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.806e-20
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = -2
Query:    8 SLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYIV 376
            +L  L +IH+HKT  LLEA+              + R   YA+ IGL FQ++DD+LD+  +   LGK+ GKDL + KATYP   G+E + K A+ L  +A +E+ YF+ +KA PL  +A +IV
Sbjct:  175 TLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIV 296          
The following BLAST results are available for this feature:
BLAST of CN184834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GGPPS_CAPAN9.231e-3360.66Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR1.575e-3258.68Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL4.581e-3258.68Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CATRO4.581e-3257.85Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH4.581e-3258.68Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPP3_ARATH1.925e-3056.20Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP4_ARATH8.087e-2954.55Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP6_ARATH3.073e-2851.64Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
GGPP2_ARATH4.437e-2754.55Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
CRTE_CYAPA1.806e-2041.46Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184834 ID=CN184834; Name=CN184834; organism=Citrus sinensis; type=EST; length=377bp
TGTCACCAACAATATATTTAGCTAAATGGTACAATGGGGCAGCCTTTGAA
ACTTCAAAATAAGCAAGCTCTTTAGTGGCTTGAGAGAATAACTCGTCTGC
AAATTTCTTCGCATTCTCAATACCCATCAGCTTTGGATACGTGGCCTTAT
CACTCAGCAAATCTTTTCCTGCTGTCTTCCCTAACACTGTAGATGACTTA
GTCACATCTAAAATATCATCCACCACTTGAAATAATAATCCTATACACCT
TGCATAATTTCTAACTCTTTCTATTTCAATCACATTTCCTCCTCCGATTA
TCACTCCGCAAACAACAGATGCCTCTAAAAGCTTCGCGGTTTTGTGCACA
TGAATGTACTCCAATTCACTCAAACTC
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