CN184831

Overview
NameCN184831
Unique NameCN184831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184831 vs. ExPASy Swiss-Prot
Match: TTG1_ARATH (Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 2.958e-104
Identity = 184/249 (73.90%), Postives = 214/249 (85.94%), Query Frame = 1
Query:  103 MENSSQESHLRSENSVTHESPYPLYAMAVC------GQRIAIGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGD--SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 825
            M+NS+ +S  RSE +VT++SPYPLYAMA        G RIA+GSF+EDY NR+D++SF+ +S+++K  P+LSF+HPYPPTKLMF P            LLASSGDFLRLW++ +  S++EP++VLNNSK+SEFCAPLTSFDWN++EPKR+GTCSIDTTCTIWDIEK VVETQLIAHDKEV+DI WGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI
Sbjct:    1 MDNSAPDSLSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPTKLMFSPPSLRRPSSGD--LLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 247          
BLAST of CN184831 vs. ExPASy Swiss-Prot
Match: LWD1_ARATH (WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.171e-76
Identity = 147/248 (59.27%), Postives = 182/248 (73.39%), Query Frame = 1
Query:  103 MENSSQESHLRSENSVTHESPYPLYAMAVCGQR-----IAIGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGD--SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 825
            +++ S E   RSE   T+E+P+ +YAM    +R     +AI S +E Y NRV++V  +  +  I++ P+LSF+HPYPPTK +F P            LLA+S DFLRLW + D  S +E  + LN++K+SEFC PLTSFDWNE EP+RIGT S DTTCTIWDIE+  V+TQLIAHDKEV+DI WG   VFASVSADGSVR+FDLRDKEHSTIIYES +PDTPL+RL WNKQD RYMATI+MDS KVV+
Sbjct:    8 IQDGSDEQQKRSE-IYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPD----LLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 250          
BLAST of CN184831 vs. ExPASy Swiss-Prot
Match: LWD2_ARATH (WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.441e-74
Identity = 143/249 (57.43%), Postives = 180/249 (72.29%), Query Frame = 1
Query:  100 KMENSSQESHLRSENSVTHESPYPLYAMAVCGQR-----IAIGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGD--SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 825
            +++N S+E   RSE   T+E+P+ +YAM    +R     +AI S IE Y NRV++V  +  +  I++ P+L F+HPYPPTK  F P            LLA+S DFLRLW + D  S +E  + L++ K+SEF  P+TSFDWNE EP+RIGT SIDTTCTIWDIE+ VV+TQLIAHDKEVYDI WG   VFASVS DGSVR+FDLRDKEHSTIIYES +P TPL+RL+WNKQD RYMAT++M S K+V+
Sbjct:    7 QIQNGSEEQSKRSE-IYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNLCFEHPYPPTKTSFIPDKECQRPD----LLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVSEDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMATVIMGSAKIVV 250          
BLAST of CN184831 vs. ExPASy Swiss-Prot
Match: DCAF7_MOUSE (DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.961e-60
Identity = 128/253 (50.59%), Postives = 164/253 (64.82%), Query Frame = 1
Query:  127 HLRSENSVTHESPYPLYAMAVCGQ-----RIAIGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIE-----------KGVVETQLIAHDKEVYDICWGEA----RVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 825
            H + +    +E+P+ +YAM    +     R+A+GSF+E+Y N+V +V  + ES       +  FDHPYP TKLM+ P            LLA+SGD+LR+W VG++      +LNN+K+S+FCAPLTSFDWNE++P  +GT SIDTTCTIW +E            G V+TQLIAHDKEVYDI +  A     +FASV ADGSVR+FDLR  EHSTIIYE PQ   PLLRL WNKQD  Y+AT+ MD  +VVI
Sbjct:    4 HGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNT--FDHPYPTTKLMWIPDTKGVYPD----LLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQ-HHPLLRLCWNKQDPNYLATMAMDGMEVVI 249          
BLAST of CN184831 vs. ExPASy Swiss-Prot
Match: DCAF7_HUMAN (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.961e-60
Identity = 128/253 (50.59%), Postives = 164/253 (64.82%), Query Frame = 1
Query:  127 HLRSENSVTHESPYPLYAMAVCGQ-----RIAIGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIE-----------KGVVETQLIAHDKEVYDICWGEA----RVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 825
            H + +    +E+P+ +YAM    +     R+A+GSF+E+Y N+V +V  + ES       +  FDHPYP TKLM+ P            LLA+SGD+LR+W VG++      +LNN+K+S+FCAPLTSFDWNE++P  +GT SIDTTCTIW +E            G V+TQLIAHDKEVYDI +  A     +FASV ADGSVR+FDLR  EHSTIIYE PQ   PLLRL WNKQD  Y+AT+ MD  +VVI
Sbjct:    4 HGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNT--FDHPYPTTKLMWIPDTKGVYPD----LLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQ-HHPLLRLCWNKQDPNYLATMAMDGMEVVI 249          
BLAST of CN184831 vs. ExPASy Swiss-Prot
Match: DCAF7_DICDI (DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.785e-59
Identity = 125/233 (53.65%), Postives = 160/233 (68.67%), Query Frame = 1
Query:  151 THESPYPLYAMAVCGQ-----RIAIGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGDS--SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEAR-VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 825
            T+ SP+ +Y ++   +     R+AIGSF+EDYTNRVDV+    E+   +      F+HPYPPTK M+ P            LLA++GD+LRLW+VG +  SI+  ++L N   SEFCAPL+SFDWNE +P  + T SIDTTCTIW+IE G  +TQLIAHDKEV+DI +     +FASV ADGS+R+FDLR+ EHSTIIYE+P    PLLRL WNKQD  Y+ATI  DS KV+I
Sbjct:    8 TYNSPWVIYGLSWSSRVNRPFRLAIGSFLEDYTNRVDVIQLNEETDQFEV--VCGFEHPYPPTKCMWIPDKNSNRPD----LLATTGDYLRLWEVGSNQRSIKLKSLLTNV-ISEFCAPLSSFDWNETDPSLLATSSIDTTCTIWNIETGQAKTQLIAHDKEVFDIAFARGTDLFASVGADGSLRMFDLRNLEHSTIIYETPS-FVPLLRLCWNKQDPNYLATIQQDSPKVII 232          
BLAST of CN184831 vs. ExPASy Swiss-Prot
Match: YBE8_SCHPO (Uncharacterized WD repeat-containing protein C17D11.08 OS=Schizosaccharomyces pombe GN=SPBC17D11.08 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.822e-30
Identity = 91/230 (39.57%), Postives = 118/230 (51.30%), Query Frame = 1
Query:  202 IAIGSFIEDYTNRVDVVSF--EPESLSIKTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVG-----DSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW--GEARVFASVSADGSVRIFDLRDKEHSTIIYE---------------SPQPDTPLLRLAWNKQDLRYMATILMDSNKV 819
            IA+GS  E+  N + ++      +  S       + D  YP TKL+++P            LLAS+   LRLW        DS +   A L+    +   APLTSFDW + +P  I   S+DTTCT+WDI     +TQLIAHDKEVYD+ +      VF SV ADGSVR+FDLR  +HSTIIYE               SP    PLLRL+    D+  MAT   +S+ V
Sbjct:   69 IAMGSLNEEPNNMIQLLKLITGDDGNSHLEKAQAATDLEYPVTKLLWNPSSVGSNTDS--QLLASTDQQLRLWKTDFEAGIDSPLLCQASLSTHVKTHNNAPLTSFDWCKTDPSYIVVSSLDTTCTVWDIVAQQSKTQLIAHDKEVYDVAFLKDSINVFVSVGADGSVRMFDLRSLDHSTIIYEGDSTFWKRNGDYTNASPPVSAPLLRLSACDSDVNLMATFHHNSSDV 296          
BLAST of CN184831 vs. ExPASy Swiss-Prot
Match: YP247_YEAST (WD repeat-containing protein YPL247C OS=Saccharomyces cerevisiae GN=YPL247C PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.229e-25
Identity = 86/262 (32.82%), Postives = 123/262 (46.95%), Query Frame = 1
Query:  154 HESPYPLYAMA-VCGQRIAIGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGDSSIEPVAVLNNS------------------KSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG-VVETQLIAHDKEVYDICW--GEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPD---------TP-------LLRLAWNKQDLRYMATILMDSNKVVI 825
            ++S YPL+ +       + +GS+ ED  N++ V+        +     +  D  YP +K+ + P             LA+  D LR+W V     +    +N S                  K      P+TSFDWN ++   I + SIDTTC +WD++    V+TQLIAHD EV+D+ +     ++FAS   DGSVR+FDLR   HSTIIYE P            TP       LLRL  +  D   +AT   DSNK++I
Sbjct:  125 YQSHYPLFGLDWSADDYVCLGSYKEDSRNKLQVLHSND---LLSWESVVDADVVYPVSKIQWVPSQLYPRK------LATCSDSLRIWSVSPEERQFQEQINLSLCKYNRQHPANPAAADDMKVIGTFPPITSFDWNTVDTNLIISSSIDTTCIVWDLQSSHYVKTQLIAHDSEVFDVRFLTKSTQLFASCGGDGSVRVFDLRSLAHSTIIYEPPSSSVSGATAGTITPSSKGSDALLRLEPSPYDPNVLATFAADSNKIII 377          
The following BLAST results are available for this feature:
BLAST of CN184831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TTG1_ARATH2.958e-10473.90Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis ... [more]
LWD1_ARATH1.171e-7659.27WD repeat-containing protein LWD1 OS=Arabidopsis t... [more]
LWD2_ARATH5.441e-7457.43WD repeat-containing protein LWD2 OS=Arabidopsis t... [more]
DCAF7_MOUSE9.961e-6050.59DDB1- and CUL4-associated factor 7 OS=Mus musculus... [more]
DCAF7_HUMAN9.961e-6050.59DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
DCAF7_DICDI3.785e-5953.65DDB1- and CUL4-associated factor 7 homolog OS=Dict... [more]
YBE8_SCHPO4.822e-3039.57Uncharacterized WD repeat-containing protein C17D1... [more]
YP247_YEAST1.229e-2532.82WD repeat-containing protein YPL247C OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184831 ID=CN184831; Name=CN184831; organism=Citrus sinensis; type=EST; length=825bp
GAGGTGTTCTTCCAAATTTTCCAGGAAAATTCAAACTTTATCGAAAACAA
ATAAAAACAGGAGCCCAAACCCCGAATAGAGTTCAAAGAAAACAAAACAA
AAATGGAAAACTCAAGCCAAGAATCCCACCTCAGATCCGAGAACTCGGTG
ACCCATGAATCTCCTTACCCTCTCTACGCCATGGCTGTGTGCGGCCAACG
CATCGCCATCGGAAGCTTCATTGAAGACTACACCAATCGAGTCGACGTCG
TTTCATTCGAGCCAGAATCTCTCTCTATCAAGACCCATCCCTCTCTCTCC
TTTGACCACCCTTACCCACCCACCAAGCTAATGTTTGATCCCAACTCTTC
ATCACGCAAATCCTCCTCCAACCGTCATCTGCTCGCTTCATCCGGCGACT
TTCTTCGCCTTTGGGACGTTGGCGATTCATCGATCGAGCCCGTTGCCGTG
CTCAACAACAGCAAGAGCAGTGAGTTTTGCGCTCCTTTGACTTCATTTGA
TTGGAACGAGATTGAACCCAAGAGAATTGGAACTTGTAGCATCGACACTA
CTTGCACTATCTGGGATATTGAAAAGGGTGTTGTTGAAACTCAACTTATT
GCTCATGACAAAGAGGTTTACGACATCTGCTGGGGTGAAGCTAGGGTTTT
TGCTTCAGTTTCTGCTGATGGGTCAGTGAGAATTTTCGATTTGAGAGACA
AAGAACATTCCACGATTATTTACGAGAGCCCGCAACCCGACACCCCATTG
CTTAGATTAGCTTGGAATAAGCAGGATTTAAGGTACATGGCAACTATATT
GATGGACAGTAATAAAGTTGTCATT
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