CN184824

Overview
NameCN184824
Unique NameCN184824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2448 contig Csv1_Contig2448:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184824 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.054e-40
Identity = 65/101 (64.36%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  359 CIFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKG 661
            C+FDV  +GAVGDGS                VE+GVVLAP   VFKITSTIFSGPCKP LVFQLDGVLMPPDGP+ WP+ D++ QWLVFY+LD  TF+GKG
Sbjct:   78 CVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKG 178          

HSP 2 Score: 45.4394 bits (106), Expect = 3.054e-40
Identity = 16/17 (94.12%), Postives = 16/17 (94.12%), Query Frame = 1
Query:  670 EGNGQPWWDLPCKPHRG 720
            EGNGQ WWDLPCKPHRG
Sbjct:  181 EGNGQKWWDLPCKPHRG 197          
BLAST of CN184824 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.379e-11
Identity = 32/100 (32.00%), Postives = 48/100 (48.00%), Query Frame = 2
Query:  362 IFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKG 661
            +F+V  YGAVGDG                   + V+L P++  F + + +F GPC+P L F++DG ++    P  W  +   K WL F +L D    G G
Sbjct:   58 VFNVEQYGAVGDGKHDSTEAFATTWNAACKKASAVLLVPANKKFFVNNLVFRGPCQPHLSFKVDGTIVAQPDPARWKNS---KIWLQFAQLTDFNLMGTG 154          

HSP 2 Score: 23.0978 bits (48), Expect = 3.379e-11
Identity = 8/17 (47.06%), Postives = 9/17 (52.94%), Query Frame = 1
Query:  670 EGNGQPWWDLPCKPHRG 720
            +G GQ WW   CK   G
Sbjct:  157 DGQGQQWWAGQCKVVNG 173          
BLAST of CN184824 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.388e-11
Identity = 32/100 (32.00%), Postives = 48/100 (48.00%), Query Frame = 2
Query:  362 IFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKG 661
            IF+V  YGAVGDG                   + ++L P +  F + +  F+GPC+P   F++DG++     P +W    + + WL F KL   T  GKG
Sbjct:   58 IFNVEKYGAVGDGKHDCTEAFSTAWQAACKKPSAMLLVPGNKKFVVNNLFFNGPCQPHFTFKVDGIIAAYQNPASW---KNNRIWLQFAKLTGFTLMGKG 154          

HSP 2 Score: 21.1718 bits (43), Expect = 7.388e-11
Identity = 6/13 (46.15%), Postives = 8/13 (61.54%), Query Frame = 1
Query:  670 EGNGQPWWDLPCK 708
            +G G+ WW   CK
Sbjct:  157 DGQGKQWWAGQCK 169          
The following BLAST results are available for this feature:
BLAST of CN184824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PGLR4_ARATH3.054e-4064.36Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
PGLR2_CHAOB3.379e-1132.00Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR2_CRYJA7.388e-1132.00Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006C22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184824 ID=CN184824; Name=CN184824; organism=Citrus sinensis; type=EST; length=720bp
GAGGGTTTTGCTTGAGGCCTCTGCCTCTCACTTCATTCTTTTAATTCATT
CTTTATTCAGAATTTTTCCTGTGAAGTAACTTTGACACATTCTCCATTTT
TCTTGTTTTATTTTCCTGAAGAAATTGCATTCAATGGAGAGTATTCGGGA
GCTGTTACTAATTCTACTAGCAGTGATTCTTTTGGTACAAAATTTAAGCA
ATGTGGAAGCAAGGTACCATCATCACAAGAAACAGAAAAACAAAGGCTCC
ACTGTTCCTCCCCCGGCTTCTCCAGAGAATCCTGTCTCTTCATCACCTTC
ATATTCTCCATCAGTCCCCTCAGACCCTTATCCGAATGATCCAGTGAATT
CCACTGACTGCATTTTTGATGTAAGAGATTACGGGGCAGTTGGTGATGGC
TCTGCCGATGACACCGCTGCTTTCAGGGCTGCATGGAAAGCAGCCTGTGC
TGTAGAAGCAGGGGTTGTTCTGGCTCCTTCAGATTATGTTTTCAAAATCA
CTTCAACAATTTTCTCAGGGCCGTGCAAGCCAAGACTTGTATTCCAGCTT
GATGGGGTTCTAATGCCACCTGATGGACCGGATACTTGGCCCAAAGCTGA
TAGCCGCAAGCAATGGCTTGTGTTTTACAAACTTGATGATATGACATTCA
CTGGTAAAGGGCACCATTTGAAGGGAATGGACAGCCATGGTGGGATCTGC
CCTGCAAACCTCACCGGGGG
back to top