CN184817

Overview
NameCN184817
Unique NameCN184817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12734 contig Csv1_Contig12734:744..1475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 3.152e-94
Identity = 165/199 (82.91%), Postives = 186/199 (93.47%), Query Frame = -3
Query:   76 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEKETMKYKN 672
            KINQAVFPGLQGGPHNHTI+GLAVALKQ  TPEY+AYQEQVLSNSSKFAQ+L E+GY+LVSGGT+NHLVLVN++NKGIDGSRVEKVLE+VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVA+FF+AAVK+A+K+K +T+GTKLKDFVATL S   I+SEI+ LR  VE YAK+FPT+GFEKETMKYKN
Sbjct:  320 KINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          

HSP 2 Score: 32.3426 bits (72), Expect = 3.152e-94
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  687 RKGVKEINKQGQEVMY 734
            RKGVKE+NKQG+EV Y
Sbjct:  300 RKGVKEVNKQGKEVFY 315          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 4.925e-92
Identity = 160/199 (80.40%), Postives = 183/199 (91.96%), Query Frame = -3
Query:   76 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEKETMKYKN 672
            KINQAVFPGLQGGPHNHTI+GLAVALKQ  T EYKAYQEQVLSNS+KFAQ+L+ERGY+LVSGGT+NHLVLVNL+ KGIDGSRVEKVLE+VHIA+NKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVAE+F+ AV +ALK+K + +GTKLKDFV+ + S  +IQSEI+ LR +VE +AK+FPT+GFEKETMKYKN
Sbjct:  319 KINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          

HSP 2 Score: 33.4982 bits (75), Expect = 4.925e-92
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = -1
Query:  687 RKGVKEINKQGQEVMY 734
            RKGVKEINKQG+EV+Y
Sbjct:  299 RKGVKEINKQGKEVLY 314          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 8.381e-92
Identity = 165/199 (82.91%), Postives = 182/199 (91.46%), Query Frame = -3
Query:   76 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEKETMKYKN 672
            KINQAVFPGLQGGPHNHTI+GLAVALKQ  T EYKAYQEQV+SNS+KFA++L++ GY+LVSGGTENHLVLVNL+NKGIDGS+VEKVLE+VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA FF+ AVKLA+KIKG+ KGTKLKDFV T M   +IQSEIS LR  VE YAK+FPT+GFEKETMKYKN
Sbjct:  320 KINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFV-TAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          

HSP 2 Score: 31.187 bits (69), Expect = 8.381e-92
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  687 RKGVKEINKQGQEVMY 734
            RKG+KE+NKQG+EV Y
Sbjct:  300 RKGLKEVNKQGKEVFY 315          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 2.427e-91
Identity = 162/197 (82.23%), Postives = 179/197 (90.86%), Query Frame = -3
Query:   82 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEKETMKY 672
            KINQAVFPGLQGGPHNHTI+GLAVALKQ  TPEY+AYQEQVLSNSSKFA++L E+GYDLVSGGTENHLVLVNL+NKGIDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVAE+F+AAV LALK+K ++KGTKLKDFV  L +   +QSEIS L+  VE +AK+FPT+GFEK TMKY
Sbjct:  320 KINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          

HSP 2 Score: 31.187 bits (69), Expect = 2.427e-91
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  687 RKGVKEINKQGQEVMY 734
            RKG+KE+NKQG+EV Y
Sbjct:  300 RKGLKEVNKQGKEVFY 315          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.196e-90
Identity = 162/199 (81.41%), Postives = 180/199 (90.45%), Query Frame = -3
Query:   76 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEKETMKYKN 672
            KINQAVFPGLQGGPHNHTI+GLAVALKQ  T EYKAYQEQV+SN +KFA++L++ GY+LVSGGTENHLVLVNL+NKGIDGSRVEKVLE+VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA  F+ AVKLA+KIKG+ +GTKLKDFVA + S  + QSEIS LR  VE YAK+FPT+GFEKETMKYKN
Sbjct:  320 KINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQS-SAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          

HSP 2 Score: 33.113 bits (74), Expect = 1.196e-90
Identity = 13/16 (81.25%), Postives = 16/16 (100.00%), Query Frame = -1
Query:  687 RKGVKEINKQGQEVMY 734
            RKGVKE+NKQG+EV+Y
Sbjct:  300 RKGVKEVNKQGKEVLY 315          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.775e-57
Identity = 108/191 (56.54%), Postives = 142/191 (74.35%), Query Frame = -3
Query:  100 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFE 672
            +IN AVFP LQGGPHNH I+ +AVALKQ  TP ++ Y  Q+L N+   A +LLERGY LVSGGT+NHLVLV+LR KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSRGF+E+DF KV  F +  V + L++K  +K TKL+DF + L+ D     ++++LR +VE +A+ FP  GF+
Sbjct:  314 RINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVK--SKTTKLQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGFD 502          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 5.452e-56
Identity = 107/192 (55.73%), Postives = 140/192 (72.92%), Query Frame = -3
Query:   97 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEK 672
            +IN AVFP LQGGPHNH I+ +AVALKQ  TP ++ Y  QVL N+   A +LLERGY LVSGGT+NHLVLV+LR KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V +F +  V + L++K  +K  KL+DF + L+ D      ++NLR +VE +A+ FP  GF++
Sbjct:  314 RINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVK--SKTAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 503          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 108/194 (55.67%), Postives = 142/194 (73.20%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGD--TKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681
            +++ IN AVFPGLQGGPHNH I+G+AVALKQ  T E+K YQ QVL+N    + +L E GY +V+GG++NHL+L++LR+KG DG R EKVLE+  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF+KVA F +  ++L L+I+    TK T LK+F   L  DE IQS ++ LR++VE +A  F   G
Sbjct:  282 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKAT-LKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.028e-54
Identity = 105/193 (54.40%), Postives = 140/193 (72.54%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDT-KGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681
            +++ IN AVFPGLQGGPHNH I+G+AVALKQ  TPE+K YQ QV++N    + +L+E GY +V+GG++NHL+LV+LR+KG DG R EKVLE+  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF+KVA F +  ++L ++I+ DT     LK+F   L  DE  Q  +  LR +VE +A  FP  G
Sbjct:  288 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 480          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 2.991e-54
Identity = 107/194 (55.15%), Postives = 142/194 (73.20%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTK--LKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681
            +++ IN AVFPGLQGGPHNH I+G+AVALKQ  TPE++AYQ QV++N    A++L+  GY +V+GG++NHL+LV+LR+KG DG R EKVLE+  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA F +  ++L L+I+ D  G K  LK+F+  L   E  Q  ++ LR +VE +A  FP  G
Sbjct:  288 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480          
The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_SOLTU3.152e-9482.91Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH4.925e-9280.40Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR8.381e-9282.91Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_PEA2.427e-9182.23Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR1.196e-9081.41Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_BOVIN3.775e-5756.54Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_HUMAN5.452e-5655.73Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_MOUSE6.028e-5555.67Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_RABIT1.028e-5454.40Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_SHEEP2.991e-5455.15Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bp
GAGGCTATTTTATATGCTTTCAAGAAACAAATATATGACATACCTTGCTG
CATAAATATCATTAATCATCCTTCAGTTCTTGTATTTCATTGTTTCTTTC
TCAAAACCAACAGTAGGAAATCGTTTTGCGTACACCTCGACTTTGTCTCG
GAGGTTTGAAATCTCAGATTGAATGCTTTCATCTGACATCAAAGTTGCTA
CAAAATCCTTCAACTTTGTTCCTTTAGTATCACCCTTGATCTTTAATGCC
AACTTCACAGCTGCATTGAAGAACTCAGCGACCTTTTCAAAATCTTCCTC
AACAAACCCCCTAGATGTGAGGGCTGGGGTTCCCATGCGGATGCCACCAG
GAACCATAGCAGACACGTCACCAGGAACAGTGTTTTTGTTGGCTGCAATA
TGAACTGATTCCAAAACCTTTTCAACTCTTGATCCGTCAATACCCTTGTT
TCTCAAGTTCACCAAGACTAGATGGTTCTCAGTTCCACCAGATACCAGAT
CATAACCTCTCTCTAGCAAACTCTGTGCAAACTTTGAAGAATTGCTGAGA
ACTTGCTCCTGGTAGGCCTTGTATTCAGGGGTCTTTACCTGCTTAAGTGC
GACAGCTAATCCTGATATGGTGTGATTATGTGGACCACCTTGAAGTCCAG
GGAAAACTGCCTGATTAATTTTTGTCTTCATAGGGCATACATCACTTCTT
GTCCTTGTTTATTAATCTCTTTAACCCCCTTCCT
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