CN184817
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 335.109 bits (858), Expect = 3.152e-94 Identity = 165/199 (82.91%), Postives = 186/199 (93.47%), Query Frame = -3 Query: 76 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEKETMKYKN 672 KINQAVFPGLQGGPHNHTI+GLAVALKQ TPEY+AYQEQVLSNSSKFAQ+L E+GY+LVSGGT+NHLVLVN++NKGIDGSRVEKVLE+VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVA+FF+AAVK+A+K+K +T+GTKLKDFVATL S I+SEI+ LR VE YAK+FPT+GFEKETMKYKN Sbjct: 320 KINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518 HSP 2 Score: 32.3426 bits (72), Expect = 3.152e-94 Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 687 RKGVKEINKQGQEVMY 734 RKGVKE+NKQG+EV Y Sbjct: 300 RKGVKEVNKQGKEVFY 315
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1) HSP 1 Score: 326.635 bits (836), Expect = 4.925e-92 Identity = 160/199 (80.40%), Postives = 183/199 (91.96%), Query Frame = -3 Query: 76 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEKETMKYKN 672 KINQAVFPGLQGGPHNHTI+GLAVALKQ T EYKAYQEQVLSNS+KFAQ+L+ERGY+LVSGGT+NHLVLVNL+ KGIDGSRVEKVLE+VHIA+NKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVAE+F+ AV +ALK+K + +GTKLKDFV+ + S +IQSEI+ LR +VE +AK+FPT+GFEKETMKYKN Sbjct: 319 KINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517 HSP 2 Score: 33.4982 bits (75), Expect = 4.925e-92 Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 687 RKGVKEINKQGQEVMY 734 RKGVKEINKQG+EV+Y Sbjct: 299 RKGVKEINKQGKEVLY 314
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1) HSP 1 Score: 328.176 bits (840), Expect = 8.381e-92 Identity = 165/199 (82.91%), Postives = 182/199 (91.46%), Query Frame = -3 Query: 76 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEKETMKYKN 672 KINQAVFPGLQGGPHNHTI+GLAVALKQ T EYKAYQEQV+SNS+KFA++L++ GY+LVSGGTENHLVLVNL+NKGIDGS+VEKVLE+VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA FF+ AVKLA+KIKG+ KGTKLKDFV T M +IQSEIS LR VE YAK+FPT+GFEKETMKYKN Sbjct: 320 KINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFV-TAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517 HSP 2 Score: 31.187 bits (69), Expect = 8.381e-92 Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 687 RKGVKEINKQGQEVMY 734 RKG+KE+NKQG+EV Y Sbjct: 300 RKGLKEVNKQGKEVFY 315
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1) HSP 1 Score: 326.635 bits (836), Expect = 2.427e-91 Identity = 162/197 (82.23%), Postives = 179/197 (90.86%), Query Frame = -3 Query: 82 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEKETMKY 672 KINQAVFPGLQGGPHNHTI+GLAVALKQ TPEY+AYQEQVLSNSSKFA++L E+GYDLVSGGTENHLVLVNL+NKGIDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVAE+F+AAV LALK+K ++KGTKLKDFV L + +QSEIS L+ VE +AK+FPT+GFEK TMKY Sbjct: 320 KINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516 HSP 2 Score: 31.187 bits (69), Expect = 2.427e-91 Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 687 RKGVKEINKQGQEVMY 734 RKG+KE+NKQG+EV Y Sbjct: 300 RKGLKEVNKQGKEVFY 315
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 1.196e-90 Identity = 162/199 (81.41%), Postives = 180/199 (90.45%), Query Frame = -3 Query: 76 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEKETMKYKN 672 KINQAVFPGLQGGPHNHTI+GLAVALKQ T EYKAYQEQV+SN +KFA++L++ GY+LVSGGTENHLVLVNL+NKGIDGSRVEKVLE+VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA F+ AVKLA+KIKG+ +GTKLKDFVA + S + QSEIS LR VE YAK+FPT+GFEKETMKYKN Sbjct: 320 KINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQS-SAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517 HSP 2 Score: 33.113 bits (74), Expect = 1.196e-90 Identity = 13/16 (81.25%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 687 RKGVKEINKQGQEVMY 734 RKGVKE+NKQG+EV+Y Sbjct: 300 RKGVKEVNKQGKEVLY 315
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 3.775e-57 Identity = 108/191 (56.54%), Postives = 142/191 (74.35%), Query Frame = -3 Query: 100 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFE 672 +IN AVFP LQGGPHNH I+ +AVALKQ TP ++ Y Q+L N+ A +LLERGY LVSGGT+NHLVLV+LR KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSRGF+E+DF KV F + V + L++K +K TKL+DF + L+ D ++++LR +VE +A+ FP GF+ Sbjct: 314 RINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVK--SKTTKLQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGFD 502
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3) HSP 1 Score: 217.624 bits (553), Expect = 5.452e-56 Identity = 107/192 (55.73%), Postives = 140/192 (72.92%), Query Frame = -3 Query: 97 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEK 672 +IN AVFP LQGGPHNH I+ +AVALKQ TP ++ Y QVL N+ A +LLERGY LVSGGT+NHLVLV+LR KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V +F + V + L++K +K KL+DF + L+ D ++NLR +VE +A+ FP GF++ Sbjct: 314 RINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVK--SKTAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 503
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2) HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55 Identity = 108/194 (55.67%), Postives = 142/194 (73.20%), Query Frame = -3 Query: 106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGD--TKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681 +++ IN AVFPGLQGGPHNH I+G+AVALKQ T E+K YQ QVL+N + +L E GY +V+GG++NHL+L++LR+KG DG R EKVLE+ IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF+KVA F + ++L L+I+ TK T LK+F L DE IQS ++ LR++VE +A F G Sbjct: 282 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKAT-LKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2) HSP 1 Score: 213.386 bits (542), Expect = 1.028e-54 Identity = 105/193 (54.40%), Postives = 140/193 (72.54%), Query Frame = -3 Query: 106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDT-KGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681 +++ IN AVFPGLQGGPHNH I+G+AVALKQ TPE+K YQ QV++N + +L+E GY +V+GG++NHL+LV+LR+KG DG R EKVLE+ IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF+KVA F + ++L ++I+ DT LK+F L DE Q + LR +VE +A FP G Sbjct: 288 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 480
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3) HSP 1 Score: 211.846 bits (538), Expect = 2.991e-54 Identity = 107/194 (55.15%), Postives = 142/194 (73.20%), Query Frame = -3 Query: 106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTK--LKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681 +++ IN AVFPGLQGGPHNH I+G+AVALKQ TPE++AYQ QV++N A++L+ GY +V+GG++NHL+LV+LR+KG DG R EKVLE+ IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA F + ++L L+I+ D G K LK+F+ L E Q ++ LR +VE +A FP G Sbjct: 288 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480 The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bpback to top |