CN184808

Overview
NameCN184808
Unique NameCN184808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9125 contig Csv1_Contig9125:76..459. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184808 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.396e-30
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = -3
Query:   83 KHRVVTNPSTERFSIAYFFCPSYDTVIQ-NSEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFL 274
            +HRV+TNP  ERFS AYF CPSYD VI+ +S+   YR FSFREFR QVQEDV+K+G KVGLPRFL
Sbjct:  270 EHRVMTNPKVERFSTAYFMCPSYDAVIECSSDRPAYRNFSFREFRQQVQEDVKKFGFKVGLPRFL 334          

HSP 2 Score: 56.6102 bits (135), Expect = 1.396e-30
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = -2
Query:  273 RWQNGLQVKPNPEALIVNIGDLFQAWSNDVYKSVE 377
            RW   + VKPNP+ALI+NIGDLFQAWSN +YKSVE
Sbjct:  239 RW---IAVKPNPKALIINIGDLFQAWSNGMYKSVE 270          
BLAST of CN184808 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.424e-11
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = -3
Query:   80 KHRVVTNPSTERFSIAYFFCPSYDTVIQN-SEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFLI 274
            +HRV++  + ER SIA+F CP  +T I     P  YR+FSFRE++ Q + DV++ G KVGL RFLI
Sbjct:  271 RHRVISPANIERMSIAFFVCPYLETEIDCFGYPKKYRRFSFREYKEQSEHDVKETGDKVGLSRFLI 336          
The following BLAST results are available for this feature:
BLAST of CN184808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
G2OX8_ARATH1.396e-3070.77Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
G2OX7_ARATH4.424e-1150.00Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184808 ID=CN184808; Name=CN184808; organism=Citrus sinensis; type=EST; length=384bp
TTTTGGGTTTTCTGTTTTGGTGGTGCGGTGATGAGGTACAAATATTAAAC
TAATCGTAGAAAAGATTCATTTAATGACTTATAAGGAATCTGGGGAGCCC
TACTTTGTGACCATACTTTTGAACGTCCTCCTGAACCTGCAGTCTGAATT
CTCTGAAGCTAAACTTCCTGTAATTAGAAGGCTCTGAATTCTGAATCACA
GTGTCGTACGAAGGACAGAAGAAATACGCAATCGAAAACCTCTCCGTCGA
CGGATTCGTAACAACGCGGTGTTTCCACACTCTTGTAAACGTCATTGCTC
CAAGCCTGGAATAAGTCTCCAATGTTGACAATGAGAGCTTCTGGATTAGG
TTTCACCTGCAATCCATTTTGCCATCTTTGACTA
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