CN184799

Overview
NameCN184799
Unique NameCN184799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6651 contig Csv1_Contig6651:621..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184799 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.768e-25
Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 2
Query:   59 GIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYYI 337
            G K+  LTGR E  R+VT  NL +AGF  W KLIL+GS   G+TA  YKS  R  +  +G+RI+GN GDQWSDLLG++   R+FKLP+PMYYI
Sbjct:  162 GFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYYI 254          
BLAST of CN184799 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 59/94 (62.77%), Postives = 70/94 (74.47%), Query Frame = 2
Query:   59 GIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAG-NRTFKLPDPMYYI 337
            G KIVFL+GR  D+  VTEANLK AGF TWE+LILK        A+ YKS+ R+ L  +GYRI+G IGDQWSDLLG + G +RTFKLP+PMYYI
Sbjct:  160 GFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPNPMYYI 253          
BLAST of CN184799 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.794e-24
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 2
Query:   59 GIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKG-SSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAG-NRTFKLPDPMYYI 337
            G KI+FL+GR  D++ VTEANLK AG+ TWEKLILK     S   AV YK++ R+KL  +GY I+G IGDQWSDLLG + G +RTFKLP+P+YYI
Sbjct:  159 GFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNPLYYI 253          
BLAST of CN184799 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 3.741e-22
Identity = 55/91 (60.44%), Postives = 68/91 (74.73%), Query Frame = 2
Query:   59 GIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKG-SSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAG-NRTFKLPDP 325
            G KI+FL+GR  D++ VTEANLK AG+ TWEKLILK     S   AV YK++ R+KL  +GY I+G IGDQWSDLLG + G +RTFKLP+P
Sbjct:  156 GFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNP 246          
BLAST of CN184799 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 2
Query:   59 GIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYYI 337
            GI+ + L+ R +  +NVT  NL+ AG   W+ LILK +  S    VVYKS  RK L  KGY I+GNIGDQW+DL+    G R FKLP+P+YY+
Sbjct:  173 GIEPIILSDRWKLWKNVTLDNLEAAGVTYWKHLILKPNG-SNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 263          
BLAST of CN184799 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 2
Query:   59 GIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYYI 337
            GI+ + ++ R +    VT  NLK  G   W+ LILK +  S  T VVYKS  R  L  KGY I+GNIGDQW+DL+    G R FKLP+P+YY+
Sbjct:  178 GIEPIIISDRWKKLSEVTVENLKAVGVTKWKHLILKPNG-SKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 268          
The following BLAST results are available for this feature:
BLAST of CN184799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC2.768e-2556.99Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPB_SOYBN1.052e-2462.77Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSPA_SOYBN1.794e-2461.05Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN3.741e-2260.44Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSP2_ARATH1.377e-1650.54Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH6.834e-1648.39Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006C01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184799 ID=CN184799; Name=CN184799; organism=Citrus sinensis; type=EST; length=487bp
CGGAAAAGCACCACCGCTGCCAGAGAGCCTTAAGCTTTACAAAAAATTAT
TATTGCTTGGAATTAAGATTGTATTCCTCACGGGAAGACCAGAAGATCAG
AGAAATGTTACAGAAGCTAATTTAAAGCATGCTGGATTCGACACCTGGGA
GAAGCTCATCCTCAAGGGATCATCTCACTCAGGAGAAACAGCAGTGGTGT
ACAAATCAAGTGAAAGAAAGAAGCTTGAGATGAAAGGGTACAGAATTATT
GGAAACATAGGTGATCAATGGAGCGATCTCCTGGGCACCAACGCCGGCAA
TCGGACGTTCAAGCTGCCTGACCCAATGTATTACATTGGCTAATTAATAA
ATAATGTTTACTTGGGATTTTGAATAAATAATCGAAGGGCCTTCATTTGT
GCACCAAATTTGCTTTAACTTTCAAGCTGTCTGATCCATTGTACTGCATT
AGCTAATTAATATAATTAGGAATTTCAATAAAAAAAA
back to top