CN184798

Overview
NameCN184798
Unique NameCN184798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184798_ssr291 microsatellite CN184798_ssr291:291..300. BLAST: Citrus ESTs to Prunus persica proteins V1
CN184798_ssr60 microsatellite CN184798_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.475e-82
Identity = 147/207 (71.01%), Postives = 164/207 (79.23%), Query Frame = 1
Query:  106 MNRHHDPNPFDEEE--VNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCI 720
            MNRHHDPNPFDE+E  VNPFS G        +VP+  S P+ +GQ   ATVDIPLDNMN+  +K+R+LA WEA+L            AI K GV  DD+NWPPFFPIIHHDI+KEIP+HAQ+LQYLAFASW GIVLCLVFNVIA +VCWIKGGGVKIFFLATIYAL+G P+SYVLWYRPLYRAMRTDSALKF WFF  YLIHIGFCI
Sbjct:    1 MNRHHDPNPFDEDEEIVNPFSKGGG------RVPAA-SRPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPLYRAMRTDSALKFGWFFFTYLIHIGFCI 200          
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.869e-72
Identity = 133/208 (63.94%), Postives = 150/208 (72.12%), Query Frame = 1
Query:  115 HHDPNPFDEEEV--NPFSNGPAAPA---SRSQVPSVTSEPIGFGQKYG-ATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCI 720
            HHDPNPFDE     NPFSNG        SR Q     +EP GFG   G ATVD+PLD M + K K REL+SWE DL            A+  AGVP +D+NWPPFFPIIHHDI+ EIP + Q+LQYLAFASW GIVLCL +N IAVIVCWIK G  K+FFLATIYALLG+P+SY++WYRPLYRAMRT+SA  F WFFL YLIHIGFCI
Sbjct:    2 HHDPNPFDEGNADDNPFSNGGGGGGGGGSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMGDSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPANLQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATIYALLGIPLSYLIWYRPLYRAMRTNSAFSFGWFFLCYLIHIGFCI 209          
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.443e-69
Identity = 129/217 (59.45%), Postives = 152/217 (70.05%), Query Frame = 1
Query:  115 HHDPNPFDE-EEVNPFSNGPAAPASR--------------SQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCI 720
            HHDPNPFDE  + NPFSNG    A R              SQ  S     +G G K GATVDIPLDNM++ K K +EL  WEADL            A+  AGVP +++NWPPFFPIIHHDI+ EIP +AQ+LQYLAFASW GIVLCL +N IAVIVCWI+GG  K+FFLATIY +LG+P+SY++WYRPLYRAMRTDSA  F WFFL Y++HI FC+
Sbjct:    2 HHDPNPFDEGADDNPFSNGGGGGARRGGGGGGGGGGGGGKSQF-SFGFGGLGGGSKGGATVDIPLDNMSDSKGKGKELLQWEADLKRREADIRRREEALKSAGVPMEEKNWPPFFPIIHHDIANEIPANAQKLQYLAFASWLGIVLCLFWNFIAVIVCWIRGGDSKLFFLATIYGMLGMPLSYLMWYRPLYRAMRTDSAFSFGWFFLCYMLHIAFCV 217          
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.639e-65
Identity = 120/205 (58.54%), Postives = 146/205 (71.22%), Query Frame = 1
Query:  106 MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCI 720
            M   +D NPFDE++VNPF+ G   PAS S++P +  EP GF    GATVDIPLD+  + KKKE+EL + EA+L            A  +AG+  +++NWPPFFPIIHHDIS EIPIH QR+QYLAF+S  G+  CL +N+IA    WIKG GV I+ LA IY + GVP +YVLWYRPLY AMRT+SALKF WFFLFYLIHI FCI
Sbjct:    1 MAGRYDRNPFDEDDVNPFAGGSVPPASNSRMPPLPHEP-GFYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCI 204          
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.133e-65
Identity = 117/206 (56.80%), Postives = 147/206 (71.36%), Query Frame = 1
Query:  106 MNRHHDPNPFDEEEVNPFSNG-PAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCI 720
            M   +DPNPFDEE+VNPFSN   AA A+ S+   +  +   +   +G TVDIPLD   + KKKER+L + EA+L            AI +AG+  +++NWPPFFPIIHHDI+ EIPIH + LQY+AF S  G+VLCL +NV++V   WIKG GVKI+FLA IY + GVP +Y LWYRPLYRA RTDSA+KF WFF+FYL+HIGFCI
Sbjct:    1 MAGRYDPNPFDEEQVNPFSNPRSAASATNSRPAPLNPDRADYNYGFGPTVDIPLDTSTDGKKKERDLQAKEAELRKREQEVRRKEEAIARAGIVIEEKNWPPFFPIIHHDITNEIPIHLRTLQYVAFFSLLGLVLCLTWNVVSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLYRAFRTDSAIKFGWFFMFYLLHIGFCI 206          
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.696e-62
Identity = 117/209 (55.98%), Postives = 146/209 (69.86%), Query Frame = 1
Query:  106 MNRHHDPNPF-DEEEVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLDNMN--EPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCI 720
            M   +DPNPF +EEEVNPF+N    P AS S++  +  EP+GF   YG TVDIPLD     + KKKE+EL + EA+L            A  +AG+  + +NWPPFFP+IHHDI+ EIP+H QRLQY+ FA++ G+VLCL +N+IAV   WIKG GV I+ LA IY + GVP  YVLWYRPLYRA RTDSAL F WFFLFY++HI FC+
Sbjct:    1 MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGFD--YGRTVDIPLDRAGTQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFCV 207          
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.536e-60
Identity = 108/201 (53.73%), Postives = 141/201 (70.15%), Query Frame = 1
Query:  118 HDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCI 720
            H  N F++++VNPF+ G   PA+ S++P ++ EP  F       VDIPLD+  + KKKE+EL + EA+L            A  +AG+  +D+NWPPFFP+IHH+IS EIPIH QR+QYLAF+S+ G+  CL +N+IA    W+KG GV I+ LA IY + GVP +YVLWYRPLY AMRT+SALKF WFFLFYLIHI FC+
Sbjct:    5 HGRNGFEDDDVNPFAGGSVPPANNSRLPPLSHEPADF-----YNVDIPLDSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCV 200          
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.710e-59
Identity = 106/201 (52.74%), Postives = 140/201 (69.65%), Query Frame = 1
Query:  118 HDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCI 720
            +  + FD+ E+NPF+N  + PA+ S++  +  EP       GAT+DIPLD+  + K KE+EL   EA+L            AI +AG+  +++NWPPFFP+IHHDIS EIPIH QR+QY+AF S  G+V+CL++N++AV   WIKG G  I+FLA IY + GVP +YV+WYRPLYRAMRTDSALKF WFF  YL HI FC+
Sbjct:    4 YQSHSFDDGEINPFANPTSVPAATSKLSPLPPEPYD----RGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCV 200          
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.098e-56
Identity = 112/211 (53.08%), Postives = 141/211 (66.82%), Query Frame = 1
Query:  106 MNRHHDPNPFDEE-EVNPFSNGPAAPA-SRSQVPSVTSEPIGFGQKYGATVDIPLDN----MNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCI 720
            M   +D N FDE+ EVNPF+N  + PA S S++  +  EP GFG  YG TVDIPLD       + KKKE+EL + EADL            A  +AG+  + +NWP FFP+IHHDI+ EI +  QRLQY+AFA++ G+VL L +N+IAV   WIKG GV I+ LA IY + GVP  YVLWYRPLYRA R+DSA  F WFFLFY++HI FC+
Sbjct:    1 MGGRYDRNTFDEQDEVNPFANPGSVPAASNSRLSPLPPEPAGFG--YGRTVDIPLDRPGSGAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCL 209          
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.901e-56
Identity = 107/201 (53.23%), Postives = 136/201 (67.66%), Query Frame = 1
Query:  118 HDPNPFDEEEVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFC 717
            HDPNPF +EE+NPF+N  + P AS S +  +  EP       GATVDIPLD+ N+ + KE EL + E +L            AI + GV  +++NWP FFP+IHHDI  EIPIH Q++QY+AF +  G+V CL++N++AV V WIKG G  I+ L+ IY L GVP +YVLWYRPLYRA RTDSALKF  FF FY+ HI FC
Sbjct:    4 HDPNPFADEEINPFANHTSVPPASNSYLKPLPPEPYD----RGATVDIPLDSGNDLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFC 200          
The following BLAST results are available for this feature:
BLAST of CN184798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SCAM4_ARATH1.475e-8271.01Secretory carrier-associated membrane protein 4 OS... [more]
SCAM6_ORYSJ6.869e-7263.94Secretory carrier-associated membrane protein 6 OS... [more]
SCAM5_ORYSJ2.443e-6959.45Secretory carrier-associated membrane protein 5 OS... [more]
SCAM2_ORYSJ1.639e-6558.54Secretory carrier-associated membrane protein 2 OS... [more]
SCAM_PEA8.133e-6556.80Secretory carrier-associated membrane protein OS=P... [more]
SCAM3_ARATH1.696e-6255.98Secretory carrier-associated membrane protein 3 OS... [more]
SCAM3_ORYSJ3.536e-6053.73Secretory carrier-associated membrane protein 3 OS... [more]
SCAM1_ARATH8.710e-5952.74Secretory carrier-associated membrane protein 1 OS... [more]
SCAM5_ARATH3.098e-5653.08Secretory carrier-associated membrane protein 5 OS... [more]
SCAM2_ARATH6.901e-5653.23Secretory carrier-associated membrane protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184798 ID=CN184798; Name=CN184798; organism=Citrus sinensis; type=EST; length=722bp
GAGGCAACTAATAGCAGTGTTAGTGAATTTGCGAAGTTAGGTGCAAAATT
TAGGGATCTGAAAGAAAGAAAAAAACCAAAAAAAAAGAAGAAAAAACACG
AATCAATGAATCGCCACCACGACCCAAATCCCTTCGATGAAGAAGAGGTC
AATCCATTTTCGAATGGCCCGGCTGCTCCTGCATCAAGGTCACAGGTTCC
TTCTGTGACATCTGAACCTATTGGATTTGGACAGAAATATGGGGCGACAG
TTGATATTCCACTAGATAATATGAACGAGCCTAAGAAAAAAGAGAGAGAG
CTTGCATCATGGGAAGCAGATCTTAAAAGGAGGGAAAAGGAAATAAAACG
AAGAGAAGAGGCTATTGTCAAAGCTGGCGTTCCCACAGACGATAGAAATT
GGCCACCTTTTTTTCCAATTATTCATCATGACATATCGAAGGAGATACCA
ATTCATGCTCAAAGGCTGCAGTATCTTGCTTTTGCTAGTTGGTTTGGTAT
AGTTCTCTGTCTTGTATTCAATGTAATTGCCGTGATTGTCTGTTGGATTA
AAGGCGGTGGTGTCAAAATCTTTTTCCTTGCAACAATTTATGCTTTGCTT
GGAGTGCCTATGTCATATGTTCTATGGTACAGGCCTCTTTATCGAGCAAT
GAGGACGGATAGTGCATTGAAGTTCAGCTGGTTTTTCCTGTTCTACTTGA
TCCACATCGGTTTTTGTATCTT
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