CN184795

Overview
NameCN184795
Unique NameCN184795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2672 contig Csv1_Contig2672:488..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184795 vs. ExPASy Swiss-Prot
Match: APT1_ARATH (Adenine phosphoribosyltransferase 1 OS=Arabidopsis thaliana GN=APT1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.955e-12
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = -2 
Query:  271 AAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 390
            AAIRLLERVGV +VECACVIELPELKG+E+LGE  LFVLV
Sbjct:  200 AAIRLLERVGVKIVECACVIELPELKGKEKLGETSLFVLV 239
[Close]
BLAST of CN184795 vs. ExPASy Swiss-Prot
Match: APT1_WHEAT (Adenine phosphoribosyltransferase 1 OS=Triticum aestivum GN=APT1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.458e-11
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = -2 
Query:  271 AAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 390
            AA +L+ERVG  VVECACVIELPELKGR++LG+ P+FVLV
Sbjct:  136 AAAKLIERVGAKVVECACVIELPELKGRDKLGDMPVFVLV 175
The following BLAST results are available for this feature:
BLAST of CN184795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APT1_ARATH3.955e-1285.00Adenine phosphoribosyltransferase 1 OS=Arabidopsis... [more]
APT1_WHEAT7.458e-1175.00Adenine phosphoribosyltransferase 1 OS=Triticum ae... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184795 ID=CN184795; Name=CN184795; organism=Citrus sinensis; type=EST; length=391bp
TATTTGAAAGCATCAAATACAGCTGTTTACGGGAAGATGGAATTTTTTCA
TAAGCCTATCATTCTTAAACCCAACAATAGCAGACAGAACCCAGCTTCCC
CACCACTCTTTCCCCAACGTCTTAAATAAAATAAAAAGCCAATGAAACTG
CTCTTATATTACCAGATGGTTTTATGAAGTTCTCAAGCTTTGAGCAGAGC
CCGAGCGACTAGAAACCCATATGGTCCACAAACATTGCATTTAAACCATA
ACCTGAGGTCAAGTTTAGCTTACAAGAACAAATAGTGGTTTCTCTCCCAG
CCGTTCCCGACCCTTTAGCTCTGGCAGTTCAATCACGCATGCACACTCAA
CCACATGCACCCCAACTCGCTCAAGTAGCCTGATTGCAGCA
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