CN184793

Overview
NameCN184793
Unique NameCN184793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig668 contig Csv1_Contig668:196..580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.326e-28
Identity = 61/70 (87.14%), Postives = 69/70 (98.57%), Query Frame = -2
Query:  175 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 384
            +RRKEL+KVV+K AEEGKVAVRNIRRDALK+YEKL+KEKKLSEDNVKDLS+DLQKLTDEYMKK++SIYKQ
Sbjct:  194 DRRKELAKVVSKLAEEGKVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQ 263          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.154e-27
Identity = 58/70 (82.86%), Postives = 69/70 (98.57%), Query Frame = -2
Query:  175 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 384
            +RRKELSK+VAKQAEEGKVA+RNIRRDA+K+Y+KL+KEKKLSEDNVKDLSSDLQK+ DEY+KK+DSI+KQ
Sbjct:  150 DRRKELSKIVAKQAEEGKVALRNIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQ 219          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.386e-27
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = -2
Query:  175 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 384
            +RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL+KEKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQ
Sbjct:  198 DRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQ 267          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.177e-26
Identity = 57/70 (81.43%), Postives = 67/70 (95.71%), Query Frame = -2
Query:  175 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 384
            +RRKEL+K VAK AEEGKVA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:  189 DRRKELAKTVAKLAEEGKVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.177e-26
Identity = 57/70 (81.43%), Postives = 67/70 (95.71%), Query Frame = -2
Query:  175 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 384
            +RRKEL+K VAK AEEGKVA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:  189 DRRKELAKTVAKLAEEGKVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SYNJB (Ribosome-recycling factor OS=Synechococcus sp. GN=frr PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.042e-16
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKELSK VAK AEEG+V++RNIRRD + +  K +K  +LSED  K L  D+QKLTD Y+KKID +
Sbjct:  105 ERRKELSKQVAKLAEEGRVSIRNIRRDGIDSVRKREKNGELSEDESKSLQDDIQKLTDRYIKKIDEL 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_BACSU (Ribosome-recycling factor OS=Bacillus subtilis GN=frr PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERRKEL KVV K AEE KVAVRN+RRDA    +KL+K   ++ED ++  + D+QKLTDEY+ KIDS+ K
Sbjct:  108 ERRKELVKVVKKYAEEAKVAVRNVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_BACA2 (Ribosome-recycling factor OS=Bacillus amyloliquefaciens (strain FZB42) GN=frr PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERRKEL KVV K AEE KVAVRN+RRD+    +KL+K   ++ED ++  S D+QKLTDEY+ KIDS+ K
Sbjct:  108 ERRKELVKVVKKYAEEAKVAVRNVRRDSNDDLKKLEKNGDITEDELRASSEDVQKLTDEYVSKIDSVTK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_BACP2 (Ribosome-recycling factor OS=Bacillus pumilus (strain SAFR-032) GN=frr PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.949e-15
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERRKEL KVV K +EE KVAVRN+RRDA    +KL+K  +++ED ++  + D+QKLTDEY+ KID + K
Sbjct:  108 ERRKELVKVVRKYSEEAKVAVRNVRRDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVMK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_CYAP7 (Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7424) GN=frr PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.030e-15
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL K+  K AEEGKVA+RNIRRDA+ +  K +K  +LSED  ++L  ++QK+TDEY  KID +
Sbjct:  105 ERRKELVKLAGKLAEEGKVAIRNIRRDAIDSVRKQEKNHELSEDESRNLQDEIQKVTDEYTAKIDEL 171          
The following BLAST results are available for this feature:
BLAST of CN184793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
RRFC_SPIOL2.326e-2887.14Ribosome-recycling factor, chloroplastic OS=Spinac... [more]
RRFC_DAUCA1.154e-2782.86Ribosome-recycling factor, chloroplastic (Fragment... [more]
RRFC_ARATH4.386e-2784.29Ribosome-recycling factor, chloroplastic OS=Arabid... [more]
RRFC_ORYSJ2.177e-2681.43Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_ORYSI2.177e-2681.43Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRF_SYNJB2.042e-1661.19Ribosome-recycling factor OS=Synechococcus sp. GN=... [more]
RRF_BACSU1.729e-1559.42Ribosome-recycling factor OS=Bacillus subtilis GN=... [more]
RRF_BACA21.729e-1559.42Ribosome-recycling factor OS=Bacillus amyloliquefa... [more]
RRF_BACP22.949e-1556.52Ribosome-recycling factor OS=Bacillus pumilus (str... [more]
RRF_CYAP75.030e-1556.72Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184793 ID=CN184793; Name=CN184793; organism=Citrus sinensis; type=EST; length=385bp
ATTTCCACATTTCATTTCATAACAAAATATCCACCCGTGTCTCCCATTAG
TATCAAAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTC
TGAGATTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTA
AACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCT
TCATATACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACA
TTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAA
CGCATCTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTT
TGGCCACAACCTTTGACAGTTCCTTCCTCCTTTCG
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