CN184792

Overview
NameCN184792
Unique NameCN184792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2446 contig Csv1_Contig2446:1..580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN184792 vs. ExPASy Swiss-Prot
Match: Y5957_ARATH (Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.482e-30
Identity = 80/164 (48.78%), Postives = 94/164 (57.32%), Query Frame = 3 
Query:  138 ITLTYGRPLPPSDETCYPSSSASDGDFDYARPKFSSHSEPSAYADEALNNEYSSYARPKXXXXXXXXXXXXXXXXXXXXXXXAYGFQPGMGRPEPYGSGRPESEYASG--------YAKRPDSQEYGSGYGKRPESE-EYGSG--------YGRKPDSEVHGSG 578
            IT+ YGRP+PPSDETCYP SS  D DF+Y RP+F+   EPSAY DEALN EYSSY+RPK                        YG + G GR       +PESEY SG        Y +RP+ Q YGSGYG R E+E EYGSG        YGR+P+S + GSG
Sbjct:   28 ITVIYGRPIPPSDETCYPLSSGVDDDFEYERPEFTQIHEPSAYGDEALNTEYSSYSRPK-PRPAFRPDSGGGGHVQGERPNPGYGSESGYGR-------KPESEYGSGYGGQTEVEYGRRPE-QSYGSGYGGRTETESEYGSGGGGRTEVEYGRRPESGL-GSG 181
The following BLAST results are available for this feature:
BLAST of CN184792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5957_ARATH2.482e-3048.78Uncharacterized protein At5g39570 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184792 ID=CN184792; Name=CN184792; organism=Citrus sinensis; type=EST; length=580bp
GCATTTTTCTCCAGATCCCAAAAACAAAACAAAATCGCGATCGGAACAGA
GAAACAATGCCGTACTACGCTGACAATGACGATGACGTTACTGATTTCGA
CGATTACGATCCAACACCCTACGATGGTGGATACGACATCACTTTGACTT
ACGGCCGTCCTCTGCCACCGTCCGATGAGACTTGTTACCCATCATCGTCG
GCGTCAGATGGTGACTTCGACTACGCTCGTCCCAAGTTCTCGTCGCACTC
GGAGCCTTCAGCCTACGCTGACGAAGCTCTCAATAACGAGTACAGCTCCT
ACGCCCGACCAAAGCCTCGTCCCGGTTTCGTACCCGGGTCAGGGGGTGGG
TCGGGTTATGGAGGAAGGCCCCAGCCGCAGCCGGCTTATGGGTTTCAGCC
TGGAATGGGAAGGCCCGAACCTTATGGGTCGGGGAGGCCCGAATCTGAAT
ATGCTTCTGGGTATGCGAAGAGGCCTGATTCGCAGGAATATGGATCTGGG
TACGGAAAGAGACCCGAGTCGGAGGAATATGGATCTGGGTACGGCAGGAA
ACCTGATTCCGAGGTGCATGGCTCTGGATA
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