CN184787

Overview
NameCN184787
Unique NameCN184787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2445 contig Csv1_Contig2445:1..461. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184787 vs. ExPASy Swiss-Prot
Match: PLST4_ARATH (Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 5.097e-28
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = -1
Query:  252 IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAINVVETKGRSLEEIERAL 461
            IRAKAVALSLGMHWISNFVIGLYFLSVV KFGIS+VYLGFA VC+LAVLYIA NVVETKGRSLEEIE AL
Sbjct:  473 IRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIELAL 542          
BLAST of CN184787 vs. ExPASy Swiss-Prot
Match: PLST1_ARATH (Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 9.970e-16
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = -1
Query:  249 RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAINVVETKGRSLEEIERALN 458
            R K +  S  +HW+SNF++GL+FL +V K+G+ TVY  F +V LLA  +  +  VETKGRSLEEIE +LN
Sbjct:  449 RGKIMGFSFSVHWVSNFLVGLFFLDLVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLN 518          
BLAST of CN184787 vs. ExPASy Swiss-Prot
Match: PLST2_ARATH (Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.207e-14
Identity = 34/70 (48.57%), Postives = 52/70 (74.29%), Query Frame = -1
Query:  252 IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAINVVETKGRSLEEIERAL 461
            IRAKA+A  + +HW+ NF +GL FL ++ K G   +Y  F+T CL+AV+++  NV+ETKG++L+EIE +L
Sbjct:  420 IRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKGKTLQEIEISL 489          
BLAST of CN184787 vs. ExPASy Swiss-Prot
Match: PLST3_ARATH (Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.319e-11
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = -1
Query:  252 IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAINVVETKGRSLEEIERAL 461
            +RA A+A+ L +HW+ NF +GL FL ++ + G   +   F   C++AV+++  NVVETKG+SL+EIE +L
Sbjct:  421 LRATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQEIEISL 490          
The following BLAST results are available for this feature:
BLAST of CN184787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PLST4_ARATH5.097e-2891.43Plastidic glucose transporter 4 OS=Arabidopsis tha... [more]
PLST1_ARATH9.970e-1652.86Probable plastidic glucose transporter 1 OS=Arabid... [more]
PLST2_ARATH3.207e-1448.57Probable plastidic glucose transporter 2 OS=Arabid... [more]
PLST3_ARATH3.319e-1144.29Probable plastidic glucose transporter 3 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184787 ID=CN184787; Name=CN184787; organism=Citrus sinensis; type=EST; length=461bp
GAGGGTTTTTTTTTTTTTTTTACTGAGAATTTCAAAGAAACACATATATT
TAACGAAAGTTGGTTGGGTTTCAAATCTGTGCAAAACAGACCAAAATGAG
AATCAGCAAACGAGATAGTCCGGGAGATAGAATAAAGAAGGAAAGCTCTA
CAGAAGAAAATTGTCTTGCTTATTCAAGGTCAGTGTCCACGAGCCGCAGG
GAGATTATTACCCACCCACTTCTACCATTTTCAGTATCAAACTACTGGAT
TGAGAGCACGCTCTATCTCCTCCAATGATCTTCCCTTTGTTTCTACAACA
TTAATGGCTATGTACAAGACGGCAAGGAGACAGACGGTTGCAAATCCCAA
ATACACTGTACTGATTCCAAACTTGTTTACAACGCTCAAGAAGTACAGTC
CGATAACAAAGTTTGAGATCCAATGCATGCCTAATGACAAAGCAACCGCT
TTTGCTCTGAT
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