CN184785

Overview
NameCN184785
Unique NameCN184785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig236 contig Csv1_Contig236:7..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN184785 vs. ExPASy Swiss-Prot
Match: MYBJ_DICDI (Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.984e-12
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 3 
Query:  423 SNRRCERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVADDMATD 671
            + ++   K+G  WT+EEH  FL G+Q  GKG W+ IA+ +V +RTPTQ+ SHAQKY++RQ   T+ KR  S+ D+   D+  D
Sbjct:  369 TGKKTSLKQG--WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLRQKQETKNKR--SIHDLSLQDLIDD 446
The following BLAST results are available for this feature:
BLAST of CN184785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MYBJ_DICDI3.984e-1245.78Myb-like protein J OS=Dictyostelium discoideum GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184785 ID=CN184785; Name=CN184785; organism=Citrus sinensis; type=EST; length=766bp
GAGGCACGCACACCCTCTCTACCCCCTCAAAATTTCCAAGATAATTATAA
TTTAAATAGTCAATTTAATTAATTTATTAGAGATATCCGAATTTTATCGA
GTCGCGGCAGCGGTAACCGGCGATGACGCGGCGCTGCTCGCATTGCAGCA
ACAACGGGCACAACTCGCGAACGTGTCCCACGCGGGGCGGCGGCTCGTCG
CCGGGCGTGGGCGGCCTGAAGTTGTTTGGCGTCCGGCTTACGGATGGCTC
GATAATCAAGAAGAGCGCGAGCATGGGGAACTTATCGGCGTTGCACTACC
ATAGCTCCTCGTCGGCAGCCGCTTCGCCGAATCCTGACTCCCCGTTATCG
GATCACGTGCGTGACCCGACTCACTTGACCGAAGGTTACTTGTCGGATGA
CCCAGCGCACGGGTCTGGTTCATCGAATCGGCGTTGCGAGAGAAAGAAAG
GTGTCCCATGGACAGAAGAGGAGCATCGCCTGTTTCTAATTGGCCTTCAG
AAATTAGGGAAGGGAGACTGGCGTGGTATAGCACGAAATTATGTCATGTC
CAGGACTCCAACCCAGGTGGCAAGTCATGCTCAGAAGTATTTTATCCGGC
AGAGTAATGCTACTCGAAGAAAGAGGCGCTCCAGTCTTTTTGACATGGTT
GCGGATGATATGGCCACAGATACCCCACTGGTGCCAGAAGAGCAAATAAT
GCTTCCATCTCCTCTTGCCAGAGAATCTGACAATACAAGCTCACAACCTT
CTCTAAATCTTTCTCT
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