CN184781

Overview
NameCN184781
Unique NameCN184781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2444 contig Csv1_Contig2444:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_PONAB (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 2.137e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 2
Query:  377 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 613
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_MOUSE (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.137e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 2
Query:  377 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 613
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_HUMAN (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 2.137e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 2
Query:  377 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 613
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_BOVIN (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 2.137e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 2
Query:  377 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 613
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_DICDI (Probable U6 snRNA-associated Sm-like protein LSm5 OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.612e-25
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 2
Query:  383 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 613
            SQLLP ELI++CIGS+IW+ MK DKE VGTL GFD YVN+ L+DVTEYE T EG +  KLD ILLNGN++ +LVPGG
Sbjct:   14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKLDNILLNGNHVCLLVPGG 90          
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_SCHPO (U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces pombe GN=lsm5 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.201e-18
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 2
Query:  389 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 622
            +LP ELID+CIGS +WVIMK ++E  GTL GFD YVN+VL+DVTEY+ T  G    K  ++LLNGN + +L+PGG P+
Sbjct:    5 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG-VTEKHSEMLLNGNGMCMLIPGGKPE 80          
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_YEAST (U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces cerevisiae GN=LSM5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.539e-12
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  386 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKLDQ----ILLNGNNIAILVPGGSPDP 625
            ++LP E+ID+ I  K+ ++++ ++E  GTL GFD +VN++LED  E+ I  E   R  K+ Q    +LL+GNNIAILVPGG   P
Sbjct:    5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAILVPGGKKTP 89          
The following BLAST results are available for this feature:
BLAST of CN184781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LSM5_PONAB2.137e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Pongo ... [more]
LSM5_MOUSE2.137e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Mus mu... [more]
LSM5_HUMAN2.137e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Homo s... [more]
LSM5_BOVIN2.137e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Bos ta... [more]
LSM5_DICDI4.612e-2568.83Probable U6 snRNA-associated Sm-like protein LSm5 ... [more]
LSM5_SCHPO3.201e-1857.69U6 snRNA-associated Sm-like protein LSm5 OS=Schizo... [more]
LSM5_YEAST1.539e-1245.88U6 snRNA-associated Sm-like protein LSm5 OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184781 ID=CN184781; Name=CN184781; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTATCACAAGGAAGTTGTATTCAATTTAGTCAATACAATAGTACA
GAAGCAAAACATCCAAGATTTTATTACAGCTTCAAAGTAAAATATTGCAG
TACACAACGGACAATCCTTATGATATTCATAGTAAATTCACCAAGCTGTA
ACTCATTAAAAACAGACCTACTCCCACGAAGTGAACAGGTCACTGATATC
TTAAGCAGCAGCCACAGCTTCGGTGGGCTTTGAATCTGATTCTGCTGGTG
CTGGTTTTTCCTCTTCCCAGAAGGCAGTCTTCTTCCCGGTCTTAGAAACA
GTCTGGAGGACAGCGTCGGGCTGCACGTTGCCCTTCAGTCCTCCAATCGC
TCTCGCTTACTCACGGCATGGCTCACAATCCTTCGCAGCTCCTCCCATCA
GAGCTAATAGACAGATGCATAGGGTCCAAAATTTGGGTGATAATGAAAGG
AGACAAGGAGCTTGTTGGCACTCTTAAAGGATTTGACGTCTACGTCAACA
TGGTCCTTGAAGACGTCACCGAATATGAAATCACTGCTGAAGGTAGACGG
ATTACAAAGCTTGATCAGATTTTGCTCAACGGAAACAACATTGCTATACT
TGTTCCCGGTGGCTCACCTGATCCAGAATAAGGGTGTGGACTCTACCTCA
GTTTTAACGAGGTCTAGTCCACTGAGATCTGTTTTATTGTCACCAATTTT
ACTTTAAAATTCTCTAGGTGACATGCCTCTCGGCTGGAGTATTAAATTAC
GATGGATTATGTTTCACCTAACTGCAAATGCTATTTAGTAGATGGTTTTA
ATATTCACTTATGTGGAAAA
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