CN184776

Overview
NameCN184776
Unique NameCN184776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2442 contig Csv1_Contig2442:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.479e-17
Identity = 65/204 (31.86%), Postives = 96/204 (47.06%), Query Frame = 3
Query:   24 IIKKHIYSMAFSSSSRAKLSGTSHISKAPDKISKTSRPNLIEFTPSPTIYQKGGITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSI 635
            +I   I S +   S+    S T  ISK P+ +   S  N  +         +  + + +   S+P K F + T         ++  H   +K +K+I S       E L MID +Q LG +  F+  IE+ L   Y       G LH   E+ALRFRLLRQEG+YV   +F N + K+G F    V  D+  L E++EAS+L +
Sbjct:    3 LIATKISSRSCFVSAYPNNSPTFLISKFPNTVDSLSPANTAK---------RSILRNVHASVSNPSKQFHNKT--------SLEYSHELNIKKIKNILSANVDVPSENLEMIDVIQSLGTDLHFRQGIEQTLHMIYKEGLQFNGDLH---EIALRFRLLRQEGHYVQESIFKNILDKKGGFKDV-VKNDVKGLTELFEASELRV 185          

HSP 2 Score: 21.9422 bits (45), Expect = 5.479e-17
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  640 GEEGLDEAGQFSAKMLNE 693
            GEE LD A +F+   LNE
Sbjct:  187 GEETLDGAREFTYSRLNE 204          
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 66/196 (33.67%), Postives = 97/196 (49.49%), Query Frame = 3
Query:   45 SMAFSSSSRAKLSGTSHISKAPDKISKTSRPNLIEFTPSPTIYQKGGITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKL-KDLKHIFSLVG-GNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFM-IKEGRFSQFNVSEDIGRLMEVYEAS 623
            S+   S  + KL   S++       +  S    +   PS TI       S N     P+  F      P  ++ +       KL KD+K +  L+G  NS   L +ID +QRLGI Y F++EI  IL+ ++  ++      +DL   AL+FRLLRQ G+ VP ++FNNF   K G F + N+S DI   + +YEAS
Sbjct:   30 SITSISKPKPKLKSKSNLKSRSRSSTCYSIQCTVVDNPSSTITNNSDRRSANY--GPPIWSFDFVQSLPIQYKGESYTSRLNKLEKDVKRM--LIGVENSLAQLELIDTIQRLGISYRFENEIISILKEKFTNNNDNPNPNYDLYATALQFRLLRQYGFEVPQEIFNNFKNHKTGEF-KANISNDIMGALGLYEAS 220          
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  216 PLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEAS 623
            P+  F      P  ++ +     S KLK+      +   NS   L +ID +QRLGI Y F++EI  IL+  +   ST     +DL   AL FRLLR+ GY +P ++FN+F  + G+F     ++DI  ++ +YEAS
Sbjct:   79 PIWSFDFIQSLPCKYKGEPYTSRSNKLKEEVKKMLVGMENSLVQLELIDTLQRLGISYHFENEIISILKEYFTNISTNKNPKYDLYATALEFRLLREYGYAIPQEIFNDFKDETGKFKASIKNDDIKGVLALYEAS 214          
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 44/118 (37.29%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  282 HSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSI 635
            H +  ++++ +      NS + L  ID+VQRLG+ Y F  EIE+ L+  Y  ++      +DL   +LRFRLLR+ GY V  D+FN F  ++G F   +V+ D+  L+E+Y+AS L +
Sbjct:   52 HQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE---NDLYTTSLRFRLLREHGYNVSCDVFNKFKDEQGNFKS-SVTSDVQGLLELYQASYLRV 165          
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 43/123 (34.96%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  267 DIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSI 635
            + +  H +  ++++ +      NS + L  ID+VQRLG+ Y F  EIE+ L+  Y  ++      +DL   ++RFRLLR+ GY V  D+FN F  ++G F   +V+ D+  L+E+Y+AS L +
Sbjct:   47 ETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE---NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKS-SVTSDVRGLLELYQASYLRV 165          
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 43/123 (34.96%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  267 DIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSI 635
            + +  H +  ++++ +      NS + L  ID+VQRLG+ Y F  EIE+ L+  Y  ++      +DL   +LRFRLLR+ G+ V  D+FN F  ++G F   +V+ D+  L+E+Y+AS L +
Sbjct:   47 ETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE---NDLYTTSLRFRLLREHGFNVSCDVFNKFKDEQGNFKS-SVTSDVRGLLELYQASYLRV 165          
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 43/123 (34.96%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  267 DIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSI 635
            + Q  H +  ++++ +      NS   L  ID+VQ LG+ Y F  EIE+ L+  Y  ++      +DL   +LRFRLLR+ G++V  D+FN F  ++G F   +V+ D+  L+E+Y+AS L +
Sbjct:   47 ETQKRHQQLKEEVRKMIVAPMANSTLKLAFIDSVQGLGVSYHFTKEIEDELENIYHNNNDAE---NDLYTTSLRFRLLREHGFHVSCDVFNKFKDEQGNFKS-SVTSDVRGLLELYQASYLRV 165          
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: ECS1_ARTAN (Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 47/133 (35.34%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  258 FEHDIQVEHSRKLKDLKHIFS---LVGGNS----FEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSI 635
            ++ D Q    + +KDLK       L   NS     E L  IDA++RLGI Y F++EI ++ Q  Y    T  G        +L FRL+RQ G++V +D+F+ +  KEGRF + ++ +D+  L+E+YEA+ + +
Sbjct:   27 YDQDEQEGVEQVIKDLKEEVKSELLTALNSPTQHTELLKFIDAIERLGIAYYFEEEINQVFQHMY----TAYGDKWTGGNTSLWFRLMRQHGFFVSSDIFSTYKDKEGRFKE-SLEKDVHGLLELYEAAYMFV 154          
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  333 NSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSI 635
            +S + L  IDAVQRLG+ Y F+ EIE+ L+  Y  ++       DL   ALRFRLLR+ G+ +  D FN F  + G F + +++ D+  L+E+YEAS + +
Sbjct:   68 DSNQKLPFIDAVQRLGVSYHFEKEIEDELENIYRDTNNNDADT-DLYTTALRFRLLREHGFDISCDAFNKFKDEAGNF-KASLTSDVQGLLELYEASYMRV 166          
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: AMS1_ARTAN (Amorpha-4,11-diene synthase OS=Artemisia annua GN=AMS1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  348 LVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSI 635
            L +ID +QRLGI Y F+ EI+  LQ  Y    T G + +     +L FRL+R++GYYV  D+FNN+  K G F Q +++ D+  L+E+YEA+ + +
Sbjct:   64 LKLIDEIQRLGIPYHFEREIDHALQCIY---ETYGDNWNG-DRSSLWFRLMRKQGYYVTCDVFNNYKDKNGAFKQ-SLANDVEGLLELYEATSMRV 154          
The following BLAST results are available for this feature:
BLAST of CN184776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
LINS_ARATH5.479e-1731.86Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
TPS1_CANSA1.238e-1433.67(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
TPS2_CANSA2.112e-1435.29(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
DCS4_GOSAR4.705e-1437.29(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
DCS1_GOSAR6.145e-1434.96(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
DCS2_GOSAR1.048e-1334.96(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
DCS1_GOSHI3.983e-1334.96(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
ECS1_ARTAN1.514e-1235.34Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=... [more]
DCS3_GOSAR7.512e-1240.59(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
AMS1_ARTAN9.811e-1241.67Amorpha-4,11-diene synthase OS=Artemisia annua GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184776 ID=CN184776; Name=CN184776; organism=Citrus sinensis; type=EST; length=697bp
GAGGCTCATTTCTTCAGAGAAATATTATAAAGAAGCATATATATTCGATG
GCTTTCTCTTCCAGTTCTAGAGCAAAGTTGTCCGGTACCTCCCACATTTC
AAAGGCTCCAGATAAGATTTCAAAAACTAGCAGACCTAACCTCATTGAAT
TTACTCCTTCGCCTACTATCTATCAAAAAGGGGGCATTACTAGTGACAAT
ACAGTCGCTTCTTCTCCCCTTAAACACTTCACCCACACAACTAGACACCC
CAGCTTCTTCGAGCATGATATTCAAGTCGAACATTCTCGGAAACTGAAGG
ATCTCAAGCACATATTTAGCCTAGTCGGGGGAAATTCTTTTGAAGGATTA
GTCATGATTGATGCTGTTCAACGGCTAGGCATTGAGTACCTTTTCAAAGA
TGAGATTGAAGAAATTTTACAAAGGCAATATATCATATCTTCCACTTGTG
GTGGTCACCTCCATGATCTTCAAGAGGTTGCCCTTCGCTTTCGGCTGCTG
AGACAAGAAGGTTACTACGTGCCTGCGGATATGTTTAACAACTTTATGAT
CAAGGAAGGGAGATTCAGCCAGTTCAACGTAAGTGAAGACATAGGGAGAT
TGATGGAAGTATATGAAGCTTCGCAGCTAAGCATTAGCAGGCGAAGAAGG
GCTTGACGAAGCTGGACAATTTAGTGCGAAGATGCTCAATGAGTGCA
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