CN184775

Overview
NameCN184775
Unique NameCN184775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13005 contig Csv1_Contig13005:131..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN184775 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.190e-26
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = -1 
Query:  101 LWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLQQRM--PLPKSILSIVHEGFSQSCKN 325
            LWDDLGSAKDENQDG DGSY+  Y+ E++ S  +EA+     KIS AWKRL +    P P S        FS++C N
Sbjct:  473 LWDDLGSAKDENQDGTDGSYVECYLNEYKGSTVDEARTHVAQKISRAWKRLNRECLNPCPFS------RSFSKACLN 543

HSP 2 Score: 61.6178 bits (148), Expect = 5.190e-26
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = -3 
Query:  333 LKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATI 470
            +KNG+ SSGVH+ ++H + LLG  +T+E VELI+SNP I+SS ATI
Sbjct:  425 MKNGVVSSGVHLVMLHAYILLGEELTKEKVELIESNPGIVSSAATI 470

HSP 3 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = -2 
Query:   28 NKECLCPNPFSASFTRASLNLARMVPLMYSYDDNQRLPSLEHFIKSLL 171
            N+ECL P PFS SF++A LN+AR VPLMYSYDD+QRLP  + ++KSL+
Sbjct:  524 NRECLNPCPFSRSFSKACLNIARTVPLMYSYDDDQRLP--DEYLKSLM 569
The following BLAST results are available for this feature:
BLAST of CN184775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LINS_ARATH5.190e-2650.65Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184775 ID=CN184775; Name=CN184775; organism=Citrus sinensis; type=EST; length=472bp
AACTCCTTCAGTGGGTACGCTTTCAGAGAGTAGGGACTTAATGAAATGTT
CGAGGCTTGGTAGGCGTTGGTTGTCATCGTAACTGTACATCAAGGGGACC
ATTCTTGCAAGATTGAGAGAAGCCCTCGTGAACGATGCTGAGAATGGATT
TGGGCAGAGGCATTCTTTGTTGGAGCCGCTTCCATGCGTCTGAAATTTTA
TTGATAGCACTCTTTTGTGCCTCTTCGGCGGCAGAATATCGGTGTTCCTT
CATGTAGTAATGGATGTAAGATCCATCCTTACCATCTTGATTCTCATCCT
TTGCACTTCCCAAGTCATCCCAGAGCCCACCCAATTGTTGCGGTTGATGA
TATTATGGCCGGGTTACTGTCAATAAGCTCCACCGTTTCCTCAGTTATAC
CATGACCTAGGAGAAAAAAAATGTGGACCAGTGCCACATGTACTCCTGAA
CTCTCAATCCCATTCTTCAAGT
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