CN184762

Overview
NameCN184762
Unique NameCN184762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:480..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 6.072e-73
Identity = 130/135 (96.30%), Postives = 134/135 (99.26%), Query Frame = 3 
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:   72 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
[Close]
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 6.072e-73
Identity = 130/135 (96.30%), Postives = 134/135 (99.26%), Query Frame = 3 
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  121 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
[Close]
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.036e-72
Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 3 
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  140 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.307e-72
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 3 
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  133 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.307e-72
Identity = 128/135 (94.81%), Postives = 133/135 (98.52%), Query Frame = 3 
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  133 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.307e-72
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 3 
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  133 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.013e-72
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 3 
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  133 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 3.936e-72
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 3 
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  132 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 3.936e-72
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 3 
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  133 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 3.936e-72
Identity = 128/135 (94.81%), Postives = 133/135 (98.52%), Query Frame = 3 
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  131 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of CN184762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB22_CUCSA6.072e-7396.30Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA6.072e-7396.30Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY1.036e-7295.56Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2G_SOLLC2.307e-7296.30Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC2.307e-7294.81Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_PETSP2.307e-7295.56Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB24_TOBAC3.013e-7295.56Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP3.936e-7295.56Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_PETSP3.936e-7295.56Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_TOBAC3.936e-7294.81Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184762 ID=CN184762; Name=CN184762; organism=Citrus sinensis; type=EST; length=546bp
GAGGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTAC
TTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGC
TTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAG
GGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGAT
CCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAA
GGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTAGTTTCTTCG
TTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCAC
TTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGT
CCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCT
TGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTT
GTGATTATTTATAAAATGCTTCAATTTGATAAAAAAAAAAAAAAAA
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