CN184754

Overview
NameCN184754
Unique NameCN184754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184754_ssr155 microsatellite CN184754_ssr155:155..169. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2474 contig Csv1_Contig2474:18..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184754 vs. ExPASy Swiss-Prot
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.103e-57
Identity = 107/157 (68.15%), Postives = 128/157 (81.53%), Query Frame = 2
Query:  236 SMSNISPPATPHRSRSPLLFAPQVPVAPLQRADDPPLYNQMRQHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVAEFEAPASPE 706
            SMS+ SPP +P RS SP LFAPQVPVAPLQRA+ PP  N ++ ++S     NP E+G+PTIITWN GGN+VAVEGSWDNW SR+ L +SGKDHSIL VLPSG+YHYK IVDG+ +YIPDLPFVADE+G VCN+LDVH+ VPE  +S+ EFEAP SP+
Sbjct:   45 SMSS-SPPGSPARSPSPFLFAPQVPVAPLQRANAPPP-NNIQWNQSQRVFDNPPEQGIPTIITWNQGGNDVAVEGSWDNWRSRKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPENPESIVEFEAPPSPD 199          
BLAST of CN184754 vs. ExPASy Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.463e-42
Identity = 85/156 (54.49%), Postives = 111/156 (71.15%), Query Frame = 2
Query:  251 SPPATPHRSRSPLLFAPQVPVAPLQRADDPPLYNQ--MRQHES-HAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVAEFEAPASPES 709
            SPP +P  ++SPL+FAPQVPV PLQR D+  + N   M+   S +  ASN  E+G+PT+ITW +GG E+AVEGSWDNW +R  L RSGKD +I+ VLPSGVY Y+FIVDG WR+ P+LP   D+ G   N+LD+   VPE + S++ FE P SPE+
Sbjct:   49 SPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASN--EQGIPTMITWCHGGKEIAVEGSWDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDLQDYVPEDIQSISGFEPPQSPEN 202          
BLAST of CN184754 vs. ExPASy Swiss-Prot
Match: AAKB2_RAT (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  392 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSV 676
            P ++  PT+I W+ GG EV + GS++NW+++  L +S  D   +L LP G + YKF VDG W + P  P V  +LG + NL+ V     E+ D++
Sbjct:   71 PTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDAL 165          
BLAST of CN184754 vs. ExPASy Swiss-Prot
Match: AAKB2_MOUSE (5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  392 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSV 676
            P ++  PT+I W+ GG EV + GS++NW+++  L +S  D   +L LP G + YKF VDG W + P  P V  +LG + NL+ V     E+ D++
Sbjct:   71 PAQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDAL 165          
BLAST of CN184754 vs. ExPASy Swiss-Prot
Match: AAKB2_HUMAN (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  392 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSV 676
            P ++  PT+I W+ GG EV + GS++NW+++  L +S  D   +L LP G + YKF VDG W + P  P V  +LG + NL+ V     E+ D++
Sbjct:   72 PTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDAL 166          
BLAST of CN184754 vs. ExPASy Swiss-Prot
Match: AAKB1_MOUSE (5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 2
Query:  362 QHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSV 676
            QH+  A    P +   PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N++ V     E+ D++
Sbjct:   64 QHDLEANDKAPAQAR-PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDAL 166          
BLAST of CN184754 vs. ExPASy Swiss-Prot
Match: AAKB1_RAT (5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 2
Query:  362 QHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSV 676
            QH+       P +   PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N++ V     E+ D++
Sbjct:   64 QHDLEVNEKAPAQAR-PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDAL 166          
BLAST of CN184754 vs. ExPASy Swiss-Prot
Match: AAKB1_PONAB (5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 2
Query:  410 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSV 676
            PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N++ V     E+ D++
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDAL 166          
BLAST of CN184754 vs. ExPASy Swiss-Prot
Match: AAKB1_HUMAN (5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 2
Query:  410 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSV 676
            PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N++ V     E+ D++
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDAL 166          
BLAST of CN184754 vs. ExPASy Swiss-Prot
Match: AAKB1_BOVIN (5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 2
Query:  410 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSV 676
            PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N++ V     E+ D++
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNVIQVKKTDFEVFDAL 166          
The following BLAST results are available for this feature:
BLAST of CN184754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
KINB1_ARATH2.103e-5768.15SNF1-related protein kinase regulatory subunit bet... [more]
KINB2_ARATH1.463e-4254.49SNF1-related protein kinase regulatory subunit bet... [more]
AAKB2_RAT9.883e-1538.955'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB2_MOUSE9.883e-1538.955'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB2_HUMAN9.883e-1538.955'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB1_MOUSE9.250e-1338.105'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_RAT2.061e-1237.145'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_PONAB2.691e-1240.455'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_HUMAN2.691e-1240.455'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_BOVIN4.591e-1240.455'-AMP-activated protein kinase subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184754 ID=CN184754; Name=CN184754; organism=Citrus sinensis; type=EST; length=710bp
GAGGATTCAACCGGCAGCTTGCCCTTTGCCCTTTGGCCGCTGCATTTTCA
TTTTCCCGTAGATAAAGTCGAAAGCTGAGAGTGCATTTTGTCAAAGATTT
GAGCTTGGATCTGTGATTGTGAATGTGATGGGAAATGCAAACGGGAGAGA
AGAGGGAGGAGGAGGAGGAGCAGGAGCGGGAGGAGCAGGAGGAGCAGGAG
CAAACGATGAGATTCAGATCAACGGCGGTGATCATTCAATGAGCAATATC
AGTCCTCCAGCGACTCCTCATCGTTCTCGATCTCCTCTCTTGTTCGCTCC
TCAGGTTCCTGTTGCTCCCTTGCAAAGGGCTGATGATCCTCCCCTTTACA
ATCAAATGAGGCAACATGAATCTCATGCAGCTGCTAGTAATCCTCTGGAG
AAAGGAGTCCCCACTATTATTACATGGAATTATGGTGGTAATGAAGTGGC
TGTGGAAGGATCCTGGGATAATTGGACATCAAGGAGGATACTTCATAGAT
CTGGAAAGGATCACTCAATTCTTTTGGTCCTTCCATCTGGCGTATACCAT
TACAAGTTCATCGTGGATGGTGATTGGAGATATATTCCAGATTTGCCCTT
TGTAGCTGATGAACTGGGTGGTGTTTGTAATCTTCTTGATGTTCATAGTT
GCGTGCCAGAAATTCTTGATAGTGTAGCTGAGTTTGAAGCTCCCGCATCT
CCAGAGTCAA
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