CN184748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.147e-45 Identity = 104/221 (47.06%), Postives = 125/221 (56.56%), Query Frame = 3 Query: 201 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSF-----FGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842 T R TV A RP W PG PPP+LDG+L GDFGFDPLGL DPESLRW QAELVH R+AM G AGI +LL GI P WY AG E+ F T TLFIV+L+L+G+AE +R+ D I PG + F G + K++R KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP H TI Sbjct: 50 TARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRT------KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 263
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.688e-44 Identity = 97/224 (43.30%), Postives = 126/224 (56.25%), Query Frame = 3 Query: 186 AKPGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSF-----FGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842 A G+ ++ V RP W PG PP +LDG+L GDFGFDPLGLG DPESL+W QAELVH+R+AM G AGI + L G+ P WY AG E+ F T TLF+++L+L+G+AE +R+ D I PG + F G + K++R KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP H TI Sbjct: 47 APVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRT------KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 263
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.334e-43 Identity = 93/200 (46.50%), Postives = 123/200 (61.50%), Query Frame = 3 Query: 249 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSF--FGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842 WLPG+ P YL G+L GD GFDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++ F + L A AK+ KEI NGRLAM+A LG +Q +VT GP DN+L+H+SDPWH TI Sbjct: 56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKE---------KEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 245
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 5.069e-43 Identity = 91/200 (45.50%), Postives = 124/200 (62.00%), Query Frame = 3 Query: 249 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSF--FGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842 WLPG+ P YL G+LAGD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L ++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R+ D +PGS ++ F + L AK+ KE+ NGRLAM+A LG VQ +VT GP +N+L+HLSDPWH TI Sbjct: 57 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKE---------KELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 4.596e-36 Identity = 88/217 (40.55%), Postives = 119/217 (54.84%), Query Frame = 3 Query: 192 PGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842 P +TRR +A Q + +WLPG+ P YLDG+L GD GFDPL L EDPE LRW+VQA++V+ R+AM GVAG+L ++L G+ P W E FAS+ T V + + E +R+ D +PGS ++ F S + N K KE+ NGRLAM+A LG VQ +V GP +N+ +HL+DPWH TI Sbjct: 21 PRSTRRDVAV----QAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIF----KSYSLPPHECGYPGRVFNPLNFAPLEN----KEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTI 224
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 9.582e-34 Identity = 85/222 (38.29%), Postives = 118/222 (53.15%), Query Frame = 3 Query: 222 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXX-AKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842 V + R W YLDG L GDFGFDPLGL DPE +W E+++ RFAM G AG + ++L G+ W++ G + +A TLF++++ LMGFAE +R+ D+ PGS K+ F GLE KD ++ ++ KLKEIKNGRLAM+A+LG F+QA VT VGP N+L+HL+DP + + Sbjct: 47 VKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNV 266
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.788e-33 Identity = 86/243 (35.39%), Postives = 123/243 (50.62%), Query Frame = 3 Query: 180 LPAKPGTTRRYLATVVRAQ-------QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXX-AKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842 LP+ G +R+ L RP W YLDG+L GD+GFDPLGL DPE RW E+++ RFAM G G + + L G+ W++ G + +A TLF++++ LMGFAE +R+ D+ PGS K+ F GLE KD ++ ++ KLKE+KNGRLAM+A+LG F+Q VT VGP N+L+H++DP + + Sbjct: 28 LPSSVGCSRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNV 268
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 9.605e-26 Identity = 77/232 (33.19%), Postives = 112/232 (48.28%), Query Frame = 3 Query: 171 SAFLPAKPGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 842 +A +P G T + R W+PG P YLDG+ GDFGFD LGLGE P +L Y ++EL+H R+AM V GI+ + L + + W G + + + T+ ++ L + F E +R M+ S + G+F L S KD + K+KEIKNGRLA++A++G VQ S GP++N+ HL+DPWH I Sbjct: 27 AAAMPVYVGATN----FMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS--------------------KDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.387e-24 Identity = 73/201 (36.32%), Postives = 102/201 (50.75%), Query Frame = 3 Query: 270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 830 P YL+G +AGD+G+DP GLG+ PE+ Y EL+HAR+AM G AG + + L G P VW++ GA+ +T F + +++L+G AE R + + + G F AKD K+KEIKNGRLAM AMLG F+QA VT GP++N+ +HLSDP+ Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-------------------DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPF 262
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.090e-24 Identity = 74/221 (33.48%), Postives = 103/221 (46.61%), Query Frame = 3 Query: 210 YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW---------YEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 842 Y T R W PG P +LDG+ GDFGFDPLGL PE+ + ++E+ H R+AM V G+L + L + + W Y V + + T+ ++ L + FAE +R M+ + G+F L S KD + KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH I Sbjct: 35 YATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPV--PWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFS--------------------KDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233 The following BLAST results are available for this feature:
BLAST of CN184748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184748 ID=CN184748; Name=CN184748; organism=Citrus sinensis; type=EST; length=842bpback to top |