CN184748

Overview
NameCN184748
Unique NameCN184748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.147e-45
Identity = 104/221 (47.06%), Postives = 125/221 (56.56%), Query Frame = 3
Query:  201 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSF-----FGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842
            T R   TV  A    RP W PG  PPP+LDG+L GDFGFDPLGL  DPESLRW  QAELVH R+AM G AGI   +LL   GI   P WY AG  E+ F  T TLFIV+L+L+G+AE +R+ D I PG    +  F      G +                      K++R       KEIKNGRLAM+A++G + Q   T  GPIDN+  HL+DP H TI
Sbjct:   50 TARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRT------KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 263          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.688e-44
Identity = 97/224 (43.30%), Postives = 126/224 (56.25%), Query Frame = 3
Query:  186 AKPGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSF-----FGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842
            A  G+    ++ V     RP W PG  PP +LDG+L GDFGFDPLGLG DPESL+W  QAELVH+R+AM G AGI   + L   G+   P WY AG  E+ F  T TLF+++L+L+G+AE +R+ D I PG    +  F      G +                      K++R       KEIKNGRLAM+A++G + Q   T  GPIDN+  HL+DP H TI
Sbjct:   47 APVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRT------KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 263          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.334e-43
Identity = 93/200 (46.50%), Postives = 123/200 (61.50%), Query Frame = 3
Query:  249 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSF--FGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842
            WLPG+  P YL G+L GD GFDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L  ++    GI  +P WY AG  E+ FAS+ TLF+++ +L  + E +R+ D  +PGS  ++  F  + L A                    AK+         KEI NGRLAM+A LG  +Q +VT  GP DN+L+H+SDPWH TI
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKE---------KEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 245          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.069e-43
Identity = 91/200 (45.50%), Postives = 124/200 (62.00%), Query Frame = 3
Query:  249 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSF--FGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842
            WLPG+  P YL G+LAGD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L  ++    GI  +P WY+AG  ++ FAS+ TLF+++ +L  + E +R+ D  +PGS  ++  F  + L                      AK+         KE+ NGRLAM+A LG  VQ +VT  GP +N+L+HLSDPWH TI
Sbjct:   57 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKE---------KELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.596e-36
Identity = 88/217 (40.55%), Postives = 119/217 (54.84%), Query Frame = 3
Query:  192 PGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842
            P +TRR +A     Q + +WLPG+  P YLDG+L GD GFDPL L EDPE LRW+VQA++V+ R+AM GVAG+L  ++L   G+   P W      E  FAS+ T   V  +   + E +R+ D  +PGS  ++  F     S                      + N    K KE+ NGRLAM+A LG  VQ +V   GP +N+ +HL+DPWH TI
Sbjct:   21 PRSTRRDVAV----QAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIF----KSYSLPPHECGYPGRVFNPLNFAPLEN----KEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTI 224          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.582e-34
Identity = 85/222 (38.29%), Postives = 118/222 (53.15%), Query Frame = 3
Query:  222 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXX-AKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842
            V +   R  W        YLDG L GDFGFDPLGL  DPE        +W    E+++ RFAM G AG +  ++L   G+        W++ G +        +A   TLF++++ LMGFAE +R+ D+  PGS  K+  F GLE                       KD ++ ++ KLKEIKNGRLAM+A+LG F+QA VT VGP  N+L+HL+DP +  +
Sbjct:   47 VKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNV 266          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.788e-33
Identity = 86/243 (35.39%), Postives = 123/243 (50.62%), Query Frame = 3
Query:  180 LPAKPGTTRRYLATVVRAQ-------QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXX-AKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842
            LP+  G +R+ L               RP W        YLDG+L GD+GFDPLGL  DPE        RW    E+++ RFAM G  G +  + L   G+        W++ G +        +A   TLF++++ LMGFAE +R+ D+  PGS  K+  F GLE                       KD ++ ++ KLKE+KNGRLAM+A+LG F+Q  VT VGP  N+L+H++DP +  +
Sbjct:   28 LPSSVGCSRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNV 268          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.605e-26
Identity = 77/232 (33.19%), Postives = 112/232 (48.28%), Query Frame = 3
Query:  171 SAFLPAKPGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 842
            +A +P   G T      + R      W+PG   P YLDG+  GDFGFD LGLGE P +L  Y ++EL+H R+AM  V GI+  + L +    +   W     G   +      + +  T+  ++ L + F E +R M+  S   +   G+F  L  S                    KD     + K+KEIKNGRLA++A++G  VQ S     GP++N+  HL+DPWH  I
Sbjct:   27 AAAMPVYVGATN----FMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS--------------------KDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.387e-24
Identity = 73/201 (36.32%), Postives = 102/201 (50.75%), Query Frame = 3
Query:  270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 830
            P YL+G +AGD+G+DP GLG+ PE+   Y   EL+HAR+AM G AG +  + L   G    P  VW++ GA+     +T   F            + +++L+G AE  R  + +    +   G  F                        AKD       K+KEIKNGRLAM AMLG F+QA VT  GP++N+ +HLSDP+
Sbjct:   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-------------------DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPF 262          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.090e-24
Identity = 74/221 (33.48%), Postives = 103/221 (46.61%), Query Frame = 3
Query:  210 YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW---------YEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 842
            Y  T  R      W PG   P +LDG+  GDFGFDPLGL   PE+   + ++E+ H R+AM  V G+L  + L +    +   W         Y    V   + +  T+  ++ L + FAE +R M+      +   G+F  L  S                    KD     + KLKEIKNGRLAM+A +G  VQ S     GP++N+  HL+DPWH  I
Sbjct:   35 YATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPV--PWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFS--------------------KDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233          
The following BLAST results are available for this feature:
BLAST of CN184748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB12_SOLLC4.147e-4547.06Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY2.688e-4443.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA1.334e-4346.50Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH5.069e-4345.50Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU4.596e-3640.55Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB13_SOLLC9.582e-3438.29Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA2.788e-3335.39Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB11_SOLLC9.605e-2633.19Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB26_ARATH1.387e-2436.32Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB121_HORVU3.090e-2433.48Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184748 ID=CN184748; Name=CN184748; organism=Citrus sinensis; type=EST; length=842bp
GAGGGTTAAATCTTAAATGAATGCGTGGATGCATACCTGAACAAAAAAAT
AGTTGATAGAGAGAGAAACAAAAAATGGCCGTTGCAGTTGGAAGAGGCTT
CCTCCTTCAGCCTTCCTCTTCATCGTCCTTCATTTCTAAGGACGTAAATA
AATCGTCAATAGGTATCACTAGCGCATTTCTGCCTGCCAAACCAGGAACC
ACTCGACGTTATTTGGCAACTGTGGTTCGAGCCCAGCAGCGACCAACATG
GCTCCCTGGAGTCGACCCTCCTCCCTACCTTGATGGAACTTTGGCTGGAG
ATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCGGAGAGCTTAAGG
TGGTATGTGCAGGCGGAGTTGGTGCATGCCCGTTTTGCTATGGCTGGAGT
TGCTGGAATTCTTTTCACAGATTTACTCCGCGTAACAGGGATCCGAGAGT
TGCCAGTCTGGTATGAAGCCGGTGCAGTTGAATTCAAGTTTGCCAGCACA
AGAACTTTGTTCATCGTGCAACTACTATTGATGGGCTTCGCTGAAACCAA
AAGGTATATGGATTACATTAGTCCTGGATCACAAGCCAAAGAGGGATCCT
TCTTTGGATTGGAAGCTTCGCTGGAAGGTTTAGAGCCTGGCTACCCTGGA
GGTCCTCTGCTAAACCCTCTTGGCCTGGCTAAAGATATCAGAAATGCTCG
CGACTGGAAGCTTAAAGAGATTAAGAATGGACGACTTGCAATGGTAGCTA
TGCTTGGTATCTTTGTGCAAGCTTCTGTGACTCATGTTGGTCCAATTGAT
AACATTTTGGAGCACCTCTCCGATCCATGGCACAAAACCATT
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