CN184747

Overview
NameCN184747
Unique NameCN184747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length326
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4514 contig Csv1_Contig4514:1..326. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184747 vs. ExPASy Swiss-Prot
Match: LSM8_PONAB (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.600e-14
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 2 
Query:    2 VYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 157
            V+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LDL N+RA PL  V H
Sbjct:   45 VFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
[Close]
BLAST of CN184747 vs. ExPASy Swiss-Prot
Match: LSM8_MOUSE (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.600e-14
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 2 
Query:    2 VYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 157
            V+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LDL N+RA PL  V H
Sbjct:   45 VFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
[Close]
BLAST of CN184747 vs. ExPASy Swiss-Prot
Match: LSM8_HUMAN (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.600e-14
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 2 
Query:    2 VYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 157
            V+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LDL N+RA PL  V H
Sbjct:   45 VFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
[Close]
BLAST of CN184747 vs. ExPASy Swiss-Prot
Match: LSM8_BOVIN (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.600e-14
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 2 
Query:    2 VYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 157
            V+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LDL N+RA PL  V H
Sbjct:   45 VFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
The following BLAST results are available for this feature:
BLAST of CN184747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LSM8_PONAB5.600e-1461.54U6 snRNA-associated Sm-like protein LSm8 OS=Pongo ... [more]
LSM8_MOUSE5.600e-1461.54U6 snRNA-associated Sm-like protein LSm8 OS=Mus mu... [more]
LSM8_HUMAN5.600e-1461.54U6 snRNA-associated Sm-like protein LSm8 OS=Homo s... [more]
LSM8_BOVIN5.600e-1461.54U6 snRNA-associated Sm-like protein LSm8 OS=Bos ta... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006A10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184747 ID=CN184747; Name=CN184747; organism=Citrus sinensis; type=EST; length=326bp
TGTTTACTCGACTAAGGAAGGTGTTCAGCAACTTGTGTTGGGATTGTACA
TAATAAGGGGTGACAACATAAGCATCGTTGGGGAAGTTGATGAAGAGCTG
GATTCTCATCTTGACTTGTCCAATTTGAGAGCTCATCCCCTCAAACCAGT
GATCCATTAATGGACTGTTAAAAGATGTAGAGCTGTTGTGGACTCAATGA
AGGATTAGAACAAAAACTGATAAATTTTATGCATTAGATGTATTTATTAC
TTCTGAAGTCTTTGTTTTGATGTTACTGAAATTTGTATATTATTGATGTT
AAAGGACCAGTTACCGAACGTTGGGG
back to top