CN184746

Overview
NameCN184746
Unique NameCN184746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2440 contig Csv1_Contig2440:1..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184746 vs. ExPASy Swiss-Prot
Match: CF106_DANRE (Uncharacterized protein C6orf106 homolog OS=Danio rerio GN=zgc:101577 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.049e-16
Identity = 38/108 (35.19%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  385 FILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVD 708
            F+ DV + +G  + P TPFTK WR++NTG  +WP G  L ++GGD+F     V +      +  +   D++V   +P +PG Y   WRM + +G+ +G  +WV++ V+
Sbjct:   77 FVEDVTIGEGESVPPDTPFTKTWRIQNTGTESWPPGVCLKYVGGDQFGHVNMVMVR----SLDPQEISDVSVQMRSPAVPGMYQGQWRMCTATGLFYGDVIWVILSVE 180          
BLAST of CN184746 vs. ExPASy Swiss-Prot
Match: NBR1_PONAB (Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 65/222 (29.28%), Postives = 100/222 (45.05%), Query Frame = 1
Query:   82 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA-MGSEADYI--RIDRPV--------HYQYRHPRPFRGLYDHNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-KFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDP 711
            + C+ C    I G R++  +   Y++C  C A   G + +++  ++ RPV        H +Y  PR    L      L                     +   P    L + F+ D N+ DGT + P T F K WRM+NTGN+ W   ++L ++ G+   +     ++ VP       G   ++V+F AP L G Y S+WR+S   G +FG RVW  I VDP
Sbjct:  215 IACNNCQ-RRIVGVRYQCSLCPSYNICEDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLPL---------------------QPCTPVMPTLSAAFV-DENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLTLASTEKKDVLVPCLKAGHVGV--VSVEFIAPALEGTYTSHWRLSH-KGQQFGPRVWCSIIVDP 410          
BLAST of CN184746 vs. ExPASy Swiss-Prot
Match: CF106_CHICK (Uncharacterized protein C6orf106 homolog OS=Gallus gallus GN=RCJMB04_11e11 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.485e-14
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  385 FILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVD 708
            F+ DV + +G  + P T FTK WR++NTG   WP G  L ++GGD+F     V +      +  +   D++V   +P   G Y   WRM + +G+ +G  +WV++ V+
Sbjct:   77 FVEDVTIGEGESIPPDTQFTKTWRIQNTGTEVWPPGVCLKYVGGDQFGHVNMVMVR----SLEPQEIADVSVQMCSPSTAGMYQGQWRMCTATGLYYGDVIWVILSVE 180          
BLAST of CN184746 vs. ExPASy Swiss-Prot
Match: NBR1_MOUSE (Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nbr1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.445e-13
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  379 SCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-KFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDPSLKDSISDGFGG 747
            S   +D N+ DGT + P T F K WRM+NTGN+ W   ++L ++ G+   +     ++ VP       G   ++V+F AP L G Y S+WR+S   G +FG RVW  I VDP       D   G
Sbjct:  373 SAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWNTDTKLKFMWGNLTLASTEKKDVLVPCLKAGHVGV--VSVEFIAPTLEGTYTSHWRLSH-KGQQFGPRVWCSIIVDPFPSSESPDNVEG 493          
BLAST of CN184746 vs. ExPASy Swiss-Prot
Match: NBR1_HUMAN (Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.445e-13
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  379 SCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-KFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDP 711
            S   +D N+ DGT + P T F K WRM+NTGN+ W   ++L ++ G+   +     ++ VP       G   ++V+F AP L G Y S+WR+S   G +FG RVW  I VDP
Sbjct:  372 SAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLTLASTEKKDVLVPCLKAGHVGV--VSVEFIAPALEGTYTSHWRLSH-KGQQFGPRVWCSIIVDP 480          
BLAST of CN184746 vs. ExPASy Swiss-Prot
Match: CF106_HUMAN (Uncharacterized protein C6orf106 OS=Homo sapiens GN=C6orf106 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.490e-13
Identity = 35/108 (32.41%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  385 FILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVD 708
            F+ DV + +G  + P T F K WR++N+G  AWP G  L ++GGD+F     V +      +  +   D++V   +P   G Y   WRM + +G+ +G  +WV++ V+
Sbjct:   77 FVEDVTIGEGESIPPDTQFVKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVR----SLEPQEIADVSVQMCSPSRAGMYQGQWRMCTATGLYYGDVIWVILSVE 180          
BLAST of CN184746 vs. ExPASy Swiss-Prot
Match: NBR1_RAT (Next to BRCA1 gene 1 protein OS=Rattus norvegicus GN=Nbr1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.364e-13
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  379 SCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-KFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDP 711
            S   +D N+ DGT + P T F K WRM+NTGN+ W   ++L ++ G+   +     ++ VP       G   ++V+F AP L G Y  +WR+S   G +FG RVW  I VDP
Sbjct:  374 SAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLTLASTEKKDVLVPCLKAGHIGV--VSVEFIAPTLEGTYTLHWRLSH-KGQQFGPRVWCSIIVDP 482          
BLAST of CN184746 vs. ExPASy Swiss-Prot
Match: CF106_MOUSE (Uncharacterized protein C6orf106 homolog OS=Mus musculus GN=D17Wsu92e PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.711e-11
Identity = 33/108 (30.56%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  385 FILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVD 708
            F+ DV + +G  + P T F K WR++N+G  AWP G  L ++GGD+F     V +      +  +   D++V   +    G Y   WRM + +G+ +   +WV++ V+
Sbjct:   77 FVEDVTIGEGESIPPDTQFIKTWRIQNSGAEAWPTGVCLKYVGGDQFGHVNMVMVR----SLEPQEIADVSVQMCSLSRAGMYQGQWRMCTDTGLYYEDVIWVILSVE 180          
The following BLAST results are available for this feature:
BLAST of CN184746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CF106_DANRE9.049e-1635.19Uncharacterized protein C6orf106 homolog OS=Danio ... [more]
NBR1_PONAB1.307e-1429.28Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NB... [more]
CF106_CHICK6.485e-1433.33Uncharacterized protein C6orf106 homolog OS=Gallus... [more]
NBR1_MOUSE1.445e-1337.10Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nb... [more]
NBR1_HUMAN1.445e-1339.29Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NB... [more]
CF106_HUMAN5.490e-1332.41Uncharacterized protein C6orf106 OS=Homo sapiens G... [more]
NBR1_RAT9.364e-1338.39Next to BRCA1 gene 1 protein OS=Rattus norvegicus ... [more]
CF106_MOUSE6.711e-1130.56Uncharacterized protein C6orf106 homolog OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184746 ID=CN184746; Name=CN184746; organism=Citrus sinensis; type=EST; length=839bp
GAGGGTTCCCGGCATCCTCGCCGTGGTCATTTCAAGCGGGGCTTTAATCG
TGATGCCTTGATGGGTATGTTCCATAAGGGTGTTCGTTGTGATGGTTGTG
GGGTTCATCCAATTACTGGACCTCGATTCAAATCAAAAGTGAAAGATGAT
TATGACCTGTGCAGCATCTGCTTTGCAGCTATGGGTAGTGAAGCTGATTA
TATTAGAATCGATAGGCCGGTTCATTATCAATATCGACATCCACGACCTT
TCAGAGGGTTATATGATCATAACTTTTGGCTGGGAACCCCAGGCCCAGAT
ACACAACATGTTGGTGCACTAGGAGCTCCACACATTTTGAGAGATCGTGG
AATCAAGCCTGGTCGTTCTAGGTTAGACAGTTGCTTTATTTTGGATGTTA
ATGTATTGGATGGGACTATGATGGCTCCATCTACCCCATTTACAAAGATA
TGGAGGATGCGCAATACTGGTAATTTGGCTTGGCCTAGGGGTTCTCAACT
TGTGTGGATTGGGGGCGATAAGTTTAGTGATGGAGTTTCAGTTGAGATAG
AGGTTCCTGCTGATGGTGTGCCGGTGGAGGGGGAGATTGACATTGCAGTT
GATTTTACTGCTCCTGAATTGCCTGGTCGTTATATCTCTTATTGGAGGAT
GTCCTCACCATCAGGGGTCAAATTTGGGCAACGTGTATGGGTTCTTATAC
AGGTTGATCCCTCTCTGAAGGACAGCATTAGTGATGGCTTTGGAGGCTTG
AACTTGAATGTTCCCCCTGAGAGCACTAGGTCTAATGGTGCTGAAATTAT
TGATGTGAATGTTCGGCCTATTGTGGATGGAGGCTTTCA
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