CN184740

Overview
NameCN184740
Unique NameCN184740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11626 contig Csv1_Contig11626:169..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC1_PEA (Pyruvate decarboxylase isozyme 1 OS=Pisum sativum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 2.401e-109
Identity = 195/235 (82.98%), Postives = 209/235 (88.94%), Query Frame = 3
Query:  147 LHMDTANAMGSTGQPGSAPA--PVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATADF 845
            +  +T    GST  P SAP+  P+R  +  GT+GRHLARRLVEIG +DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGY R++GVGACVVTFTVGGLS+LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF+QEL+CFQ ITC QAVVNNL DAHELIDTAISTALKESKPVYISI CNLP IPHPTFARDPVPFFLAP+VS+Q GLEAAVE  A F
Sbjct:    1 METETETPNGSTPCPTSAPSAIPLRPSSCDGTMGRHLARRLVEIGVRDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYGRAKGVGACVVTFTVGGLSILNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELQCFQTITCFQAVVNNLDDAHELIDTAISTALKESKPVYISIGCNLPAIPHPTFARDPVPFFLAPRVSNQAGLEAAVEEAAAF 235          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSJ (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. japonica GN=PDC2 PE=2 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 6.766e-104
Identity = 184/233 (78.97%), Postives = 204/233 (87.55%), Query Frame = 3
Query:  174 GSTGQPGSA---------PAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATADF 845
            G+ G P SA         PAPV  G +  +LGRHLARRLV++G  DVF+VPGDFNLTLLDHLIAEP L LVGCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLPVICI GGPNSNDYGTNRILHHTIGLPDF+QELRCFQ +TC QAVV NL DAHE IDTAI+TAL+ESKPVY+SISCNLPG+PHPTF+RDPVPFFLAP++S+++GLEAAVEAT +F
Sbjct:   18 GAVGCPASAVGCPMTSARPAPVSAGEA--SLGRHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRLVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIAGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCHQAVVTNLEDAHEQIDTAIATALRESKPVYLSISCNLPGLPHPTFSRDPVPFFLAPRLSNKMGLEAAVEATVEF 248          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSI (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2)

HSP 1 Score: 377.096 bits (967), Expect = 6.766e-104
Identity = 184/233 (78.97%), Postives = 204/233 (87.55%), Query Frame = 3
Query:  174 GSTGQPGSA---------PAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATADF 845
            G+ G P SA         PAPV  G +  +LGRHLARRLV++G  DVF+VPGDFNLTLLDHLIAEP L LVGCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLPVICI GGPNSNDYGTNRILHHTIGLPDF+QELRCFQ +TC QAVV NL DAHE IDTAI+TAL+ESKPVY+SISCNLPG+PHPTF+RDPVPFFLAP++S+++GLEAAVEAT +F
Sbjct:   18 GAVGCPASAVGCPMTSARPAPVSAGEA--SLGRHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRLVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIAGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCHQAVVTNLEDAHEQIDTAIATALRESKPVYLSISCNLPGLPHPTFSRDPVPFFLAPRLSNKMGLEAAVEATVEF 248          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC2_TOBAC (Pyruvate decarboxylase isozyme 2 OS=Nicotiana tabacum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 2.661e-100
Identity = 181/231 (78.35%), Postives = 199/231 (86.15%), Query Frame = 3
Query:  153 MDTANAMGSTGQPGSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATADF 845
            MD + A G++    S  + V       TLGRHLARRLVEIG +DVFSVPGDFNLTLLDHLIAEP L  +GCCNELNAGYAADGYAR+RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPN+NDYGTNRILHHTIGLPDF+QELRCFQ +TC QAVVNNL DAHE ID AISTALKESKPVYISISCNLP IPHPTF+RDP+PF L+P++S++ GLEAAV+A   F
Sbjct:    1 MDGSVAKGTSCIQDSQSSSVIANTDA-TLGRHLARRLVEIGIQDVFSVPGDFNLTLLDHLIAEPRLKNIGCCNELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNTNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLDDAHEQIDRAISTALKESKPVYISISCNLPAIPHPTFSRDPIPFSLSPRLSNKRGLEAAVDAAVTF 230          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC1_MAIZE (Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PDC1 PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.321e-99
Identity = 176/231 (76.19%), Postives = 199/231 (86.15%), Query Frame = 3
Query:  153 MDTANAMGSTGQPGSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATADF 845
            +  AN+      P +A A +    +  TLGRHLARRLV+IGA DVF+VPGDFNLTLLD+LIAEP L LVGCCNELNAGYAADGYARSRGVGAC VTFTVGGLSVLNAIAGAYSENLPV+CIVGGPNSNDYGTNRILHHTIGLPDF+QELRCFQ ITC QA++NNL DAHE IDTAI+TAL+ESKPVYIS+SCNL G+ HPTF+RDPVP F++P++S++  LE AVEA ADF
Sbjct:   24 LPVANSHAIIATPAAAAATLAPAGA--TLGRHLARRLVQIGASDVFAVPGDFNLTLLDYLIAEPGLTLVGCCNELNAGYAADGYARSRGVGACAVTFTVGGLSVLNAIAGAYSENLPVVCIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCYQAIINNLDDAHEQIDTAIATALRESKPVYISVSCNLAGLSHPTFSRDPVPMFISPRLSNKANLEYAVEAAADF 252          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSJ (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. japonica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 7.246e-98
Identity = 170/208 (81.73%), Postives = 190/208 (91.35%), Query Frame = 3
Query:  222 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATADF 845
            A+  TLGRHLARRLV+IGA DVF+VPGDFNLTLLD+LIAEP L L+GCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF+QELRCFQ ITC QAV+NNL DAHE IDTAI+TAL+ESKPVYIS+ CNL G+ HPTF+R+PVP F++P++S++  LE AVEA ADF
Sbjct:   40 AAGATLGRHLARRLVQIGATDVFAVPGDFNLTLLDYLIAEPGLKLIGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCYQAVINNLDDAHEQIDTAIATALRESKPVYISVGCNLAGLSHPTFSREPVPLFISPRLSNKANLEYAVEAAADF 247          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSI (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. indica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 7.246e-98
Identity = 170/208 (81.73%), Postives = 190/208 (91.35%), Query Frame = 3
Query:  222 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATADF 845
            A+  TLGRHLARRLV+IGA DVF+VPGDFNLTLLD+LIAEP L L+GCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF+QELRCFQ ITC QAV+NNL DAHE IDTAI+TAL+ESKPVYIS+ CNL G+ HPTF+R+PVP F++P++S++  LE AVEA ADF
Sbjct:   40 AAGATLGRHLARRLVQIGATDVFAVPGDFNLTLLDYLIAEPGLKLIGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCYQAVINNLDDAHEQIDTAIATALRESKPVYISVGCNLAGLSHPTFSREPVPLFISPRLSNKANLEYAVEAAADF 247          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSJ (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. japonica GN=PDC3 PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.614e-97
Identity = 172/228 (75.44%), Postives = 195/228 (85.53%), Query Frame = 3
Query:  171 MGSTGQPGSAP---APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATADF 845
            M S G  G +P   A V   +   TLG HLARRLV++G  DVF+VPGDFNLTLLDHLIAEP L +VGCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAI GAYSENLP+ICIVGGPNSNDYGTNRILHHTIGLPDF+QELRCFQ +TC QAVVNNL DAH+ ID AISTA++ESKPVYIS+SCNLP +PHPTF+RDPVP+FL+P++S+Q  L AA++AT  F
Sbjct:    1 MESNGGGGGSPKEAAVVVPSSGDATLGGHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRVVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIGGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQPLTCYQAVVNNLDDAHDQIDRAISTAIRESKPVYISVSCNLPAVPHPTFSRDPVPYFLSPRLSNQASLHAALDATLAF 228          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSI (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. indica GN=PDC3 PE=2 SV=2)

HSP 1 Score: 355.91 bits (912), Expect = 1.614e-97
Identity = 172/228 (75.44%), Postives = 195/228 (85.53%), Query Frame = 3
Query:  171 MGSTGQPGSAP---APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATADF 845
            M S G  G +P   A V   +   TLG HLARRLV++G  DVF+VPGDFNLTLLDHLIAEP L +VGCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAI GAYSENLP+ICIVGGPNSNDYGTNRILHHTIGLPDF+QELRCFQ +TC QAVVNNL DAH+ ID AISTA++ESKPVYIS+SCNLP +PHPTF+RDPVP+FL+P++S+Q  L AA++AT  F
Sbjct:    1 MESNGGGGGSPKEAAVVVPSSGDATLGGHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRVVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIGGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQPLTCYQAVVNNLDDAHDQIDRAISTAIRESKPVYISVSCNLPAVPHPTFSRDPVPYFLSPRLSNQASLHAALDATLAF 228          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC1_TOBAC (Pyruvate decarboxylase isozyme 1 (Fragment) OS=Nicotiana tabacum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.004e-72
Identity = 129/152 (84.87%), Postives = 143/152 (94.08%), Query Frame = 3
Query:  390 AADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATADF 845
            AADGYAR+RGVGACVVTFTVGGLSVLNAIAGAYSENLP+ICIVGGPNSNDYGTNRILHHTIGL DF+QE RCFQ +TC +AVVNNL DAHELIDTA+STALKESKPVYISI CNLPGIPHPTF+R+PVPF L+P++S+ +GLEAAVEA A+F
Sbjct:    1 AADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLQDFSQEPRCFQTVTCYRAVVNNLEDAHELIDTAVSTALKESKPVYISIGCNLPGIPHPTFSREPVPFALSPRLSNMMGLEAAVEAAAEF 152          
The following BLAST results are available for this feature:
BLAST of CN184740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
PDC1_PEA2.401e-10982.98Pyruvate decarboxylase isozyme 1 OS=Pisum sativum ... [more]
PDC2_ORYSJ6.766e-10478.97Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC2_ORYSI6.766e-10478.97Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC2_TOBAC2.661e-10078.35Pyruvate decarboxylase isozyme 2 OS=Nicotiana taba... [more]
PDC1_MAIZE1.321e-9976.19Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PD... [more]
PDC1_ORYSJ7.246e-9881.73Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC1_ORYSI7.246e-9881.73Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC3_ORYSJ1.614e-9775.44Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]
PDC3_ORYSI1.614e-9775.44Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]
PDC1_TOBAC4.004e-7284.87Pyruvate decarboxylase isozyme 1 (Fragment) OS=Nic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184740 ID=CN184740; Name=CN184740; organism=Citrus sinensis; type=EST; length=846bp
GAGGAGAAACCAGCCCACAGTTCACGAAGACCCAACCAATCACAGATTCA
CAATAGACAATACTCCTATAATAACAGCCCCCACTTGCGCCATCGGTGGA
ACATAAGAAATTGAAAACAGCTTCGTTCTTGTTATACAATATACGCTTAC
ACATGGACACTGCAAACGCAATGGGCTCAACGGGTCAACCCGGCTCAGCT
CCAGCTCCAGTCCGCGGCGGGGCCTCCGTCGGCACGCTAGGCCGGCACCT
GGCGCGGCGGCTGGTGGAGATCGGCGCGAAGGATGTCTTCTCGGTTCCGG
GAGACTTTAACTTGACGCTCTTGGATCATCTCATAGCGGAGCCGGAGTTA
AACTTGGTCGGCTGCTGCAACGAGCTGAACGCCGGATACGCCGCCGACGG
CTACGCACGCTCCAGAGGCGTGGGGGCCTGTGTGGTGACGTTCACTGTGG
GTGGCCTTAGCGTCTTGAACGCCATTGCTGGCGCTTACAGTGAGAATTTG
CCCGTTATCTGTATCGTCGGCGGCCCTAATTCTAATGATTATGGGACTAA
CAGGATCTTGCATCATACCATTGGCTTGCCTGATTTCACCCAAGAACTTA
GATGCTTCCAGGCTATCACCTGTTCTCAGGCTGTGGTGAATAATCTGGGC
GATGCACATGAGCTCATTGACACAGCAATCTCTACTGCTTTGAAGGAAAG
CAAACCGGTTTATATCAGTATAAGCTGTAATTTGCCTGGAATTCCTCATC
CCACATTTGCTAGGGACCCCGTCCCCTTCTTTCTTGCTCCTAAGGTAAGC
CATCAATTAGGATTAGAAGCAGCCGTGGAAGCGACTGCTGATTTTT
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