CN184732

Overview
NameCN184732
Unique NameCN184732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4210 contig Csv1_Contig4210:108..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184732 vs. ExPASy Swiss-Prot
Match: ZN593_XENTR (Zinc finger protein 593 OS=Xenopus tropicalis GN=znf593 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 3
Query:   60 SQEMGKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPL--PFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 389
            S+++G   + K K      KT R  K L    D ++ ++ + ++AK  L    D  LPG  Q+YCLHC RYF       EHFKTK HK+R+K++   +P+TQ +A+ AAGMG
Sbjct:    4 SKQVGNHKSDKKKNISKLWKTKRRVKDL----DQIHHDM-KPENAKLLLNQEIDYQLPGNAQHYCLHCSRYFVDLKTLKEHFKTKVHKRRLKQLR-EEPYTQEEAERAAGMG 109          
BLAST of CN184732 vs. ExPASy Swiss-Prot
Match: BUD20_YEAST (Bud site selection protein 20 OS=Saccharomyces cerevisiae GN=BUD20 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  105 RYS---HKTARLAKFLRKGDDAVYDELQRSDSAKNPL--PFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGM 392
            RYS   +KT R  + L    D +Y++L   +S +  L  P DE  PG+GQ+YC+HC +Y         H K K HK+RVKE+ G  P+TQ  +D AAG  +
Sbjct:    3 RYSVKRYKTKRRTRDL----DLIYNDLSTKESVQKLLNQPLDETKPGLGQHYCIHCAKYMETAIALKTHLKGKVHKRRVKELRG-VPYTQEVSDAAAGYNL 98          
BLAST of CN184732 vs. ExPASy Swiss-Prot
Match: ZN593_DICDI (Zinc finger protein 593 homolog OS=Dictyostelium discoideum GN=DDB_G0275351 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3
Query:   96 KKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAK-NPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKL 413
            KK++Y  K AR  K   K  D ++DE+Q     K +    D DLPGMGQ YC+HC ++F        H K K HK RVKE+   KP++  ++ +       DNG KL
Sbjct:   13 KKKQY--KRARSTKNRAKDIDQIFDEIQPETIDKFSKFEVDPDLPGMGQNYCIHCSKHFVTNEDLQSHIKGKPHKIRVKELK-TKPYSLAESQIPV-----DNGVKL 111          
BLAST of CN184732 vs. ExPASy Swiss-Prot
Match: ZN593_CAEEL (Zinc finger protein 593 homolog OS=Caenorhabditis elegans GN=Y56A3A.18 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 3
Query:   81 PNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKN-PLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 389
            P+   +K   S+KT +      K  D ++++L+   +AK      D DLPG GQ+YC+ C+R+F  E  R  H KTK HK RVK +    P+TQ +A+ A G G
Sbjct:    2 PSGGQRKHTISNKTRKRPG---KDLDQIHEDLKPEKAAKLLQQEIDYDLPGNGQFYCIECERHFVDEKTRQLHRKTKLHKNRVKTLK-EVPYTQAEANAAGGSG 101          
BLAST of CN184732 vs. ExPASy Swiss-Prot
Match: BUD20_SCHPO (Zinc finger protein bud20 OS=Schizosaccharomyces pombe GN=bud20 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 3
Query:   90 KVKKRRYSHKTARLAKFLRK----GDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMP 395
            +V ++R  H     A F  +      D ++++L  S+   + LP D DLPG+GQ+YC+ C RYF        H K K HK+R+K +   +P+TQ +A+ A  +G P
Sbjct:    3 RVARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTESEKF-DKLPIDPDLPGLGQHYCIECARYFDSSQALLVHKKGKVHKRRLKNLR-EEPYTQEEAEAAVNIGQP 106          
The following BLAST results are available for this feature:
BLAST of CN184732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ZN593_XENTR1.470e-1240.18Zinc finger protein 593 OS=Xenopus tropicalis GN=z... [more]
BUD20_YEAST1.244e-1140.59Bud site selection protein 20 OS=Saccharomyces cer... [more]
ZN593_DICDI2.122e-1139.25Zinc finger protein 593 homolog OS=Dictyostelium d... [more]
ZN593_CAEEL2.122e-1138.46Zinc finger protein 593 homolog OS=Caenorhabditis ... [more]
BUD20_SCHPO6.175e-1134.91Zinc finger protein bud20 OS=Schizosaccharomyces p... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184732 ID=CN184732; Name=CN184732; organism=Citrus sinensis; type=EST; length=598bp
GAGGTTATCAACAGAACCTAAAAACCCTAATTTTGACTTTCTCAACAACT
GACTATCACTCCCAAGAAATGGGTAAGTGCCCAAACCGGAAAGTGAAGAA
GAGAAGATACTCTCACAAGACTGCTCGCCTGGCAAAATTCCTACGCAAAG
GCGACGATGCCGTTTATGATGAGCTTCAAAGGTCAGATTCCGCAAAGAAT
CCCTTGCCTTTTGACGAGGATTTGCCTGGAATGGGCCAATATTATTGCTT
ACACTGCGACCGTTACTTTGCTCATGAGTCGGTGAGGGACGAGCATTTCA
AGACAAAGCGACACAAGAAGCGTGTAAAGGAAATGATGGGGCCTAAACCT
CATACACAACTTGATGCTGACTTAGCTGCTGGGATGGGTATGCCAGATAA
TGGTCCAAAGCTTATGCCTGTGTGAGGTTTTTGTTTTTGGGGTTAATTCA
ATATGTATGCTATGATATGAGAGTTAATGTCAGGTCTTCAGAGAATGGAA
GATATTAGGTGTTGTAAGGATTATATCTTTTCTGACAGTTGCTAATTTTT
TTCCTGAAAGAGTATAAATTATTGTTTTTCCTAAAAAAAAAAAAAAAA
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