CN184727

Overview
NameCN184727
Unique NameCN184727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13395 contig Csv1_Contig13395:36..336. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184727 vs. ExPASy Swiss-Prot
Match: LGUL_BRAOG (Putative lactoylglutathione lyase OS=Brassica oleracea var. gemmifera PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13
Identity = 41/84 (48.81%), Postives = 47/84 (55.95%), Query Frame = 3 
Query:   51 WPKKDKRRFLHAVYRVGDLDRTIKFYTESLWDEAVEKERRPGREILKCLSWIWPRTVSLCCGVNVQLMV*LHMIIGTGFGHFAI 302
            WPKKDKRRFLH VYRVGDLDRTI+FYTE    + + K   P  +         P T +    +     V     IGTGFGHFAI
Sbjct:   10 WPKKDKRRFLHVVYRVGDLDRTIQFYTECFGMKVLRKRDVPEEKYSNAFLGFGPETSNFVVELTYNYGV-SSYDIGTGFGHFAI 92
[Close]
BLAST of CN184727 vs. ExPASy Swiss-Prot
Match: LGUL_ORYSJ (Lactoylglutathione lyase OS=Oryza sativa subsp. japonica GN=GLX-I PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.041e-12
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:  139 FGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN 249
            FGMKLLRKRDVPEEKY+NAFLGFGPE ++F +ELTYN
Sbjct:   46 FGMKLLRKRDVPEEKYTNAFLGFGPEDTNFALELTYN 82

HSP 2 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 38/84 (45.24%), Postives = 45/84 (53.57%), Query Frame = 3 
Query:   51 WPKKDKRRFLHAVYRVGDLDRTIKFYTESLWDEAVEKERRPGREILKCLSWIWPRTVSLCCGVNVQLMV*LHMIIGTGFGHFAI 302
            WPKKDK+R LHAVYRVGDLDRTIK YTE    + + K   P  +         P   +    +     V  +  IG GFGHFAI
Sbjct:   17 WPKKDKKRLLHAVYRVGDLDRTIKCYTECFGMKLLRKRDVPEEKYTNAFLGFGPEDTNFALELTYNYGVDKY-DIGAGFGHFAI 99
The following BLAST results are available for this feature:
BLAST of CN184727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LGUL_BRAOG1.239e-1348.81Putative lactoylglutathione lyase OS=Brassica oler... [more]
LGUL_ORYSJ3.041e-1283.78Lactoylglutathione lyase OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184727 ID=CN184727; Name=CN184727; organism=Citrus sinensis; type=EST; length=304bp
ATCAAATGGCTGAGGCTTCTCCTGCTGCTGCTAATGCCGAGTTGCTGGAA
TGGCCAAAGAAAGATAAGCGACGCTTCCTTCATGCTGTGTATCGTGTTGG
TGATCTTGATCGCACCATCAAATTTTACACCGAATCGCTTTGGGATGAAG
CTGTTGAGAAAGAGAGACGTCCCGGAAGAGAAATACTCAAATGCCTTTCT
TGGATTTGGCCCCGAACAGTCTCACTTTGTTGTGGAGTTAACGTACAACT
AATGGTGTAACTTCATATGATAATTGGAACTGGTTTTGGCCATTTTGCAA
TTGC
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