CN184724

Overview
NameCN184724
Unique NameCN184724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5967 contig Csv1_Contig5967:30..377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184724 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.152e-57
Identity = 103/108 (95.37%), Postives = 108/108 (100.00%), Query Frame = 1
Query:   25 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIP 348
            MGRVIRAQRKGAGSVFKSHTHHRKGPARFR+LDFGERNGYLKGVITE+IHDPGRGAPLARVTFRHPFRY+HQKELFVAAEGMYTGQFVYCG+KATL+VGNVLPLRSIP
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIP 108          
BLAST of CN184724 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.043e-56
Identity = 102/108 (94.44%), Postives = 107/108 (99.07%), Query Frame = 1
Query:   25 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIP 348
            MGR+IRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITE+IHDPGRGAPLARVTFR+PFRY HQKELFVAAEGMYTGQFVYCG+KATL+VGNVLPLRSIP
Sbjct:    1 MGRLIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRYPFRYNHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIP 108          
BLAST of CN184724 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 1.014e-55
Identity = 101/108 (93.52%), Postives = 107/108 (99.07%), Query Frame = 1
Query:   25 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIP 348
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGV+TEIIHDPGRGAPLARVTFRHPFR++ QKELFVAAEGMYTGQF+YCG+KATLVVGNVLPLRSIP
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIP 108          
BLAST of CN184724 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 3.853e-55
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 1
Query:   25 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIP 348
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGV+TEIIHDPGRGAPLARV FRHPFR++ QKELFVAAEGMYTGQF+YCG+KATLVVGNVLPLRSIP
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIP 108          
BLAST of CN184724 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 2.584e-51
Identity = 95/109 (87.16%), Postives = 103/109 (94.50%), Query Frame = 1
Query:   25 MGRVIRAQRKGA-GSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIP 348
            MGRVIRAQRKGA GSVFKSHTHHRKGPA+FRSLD+GERNGYLKG++TEIIHDPGRGAPLARV FRHPFRY  QKELFVAAEGMYTGQ++YCG+KA L+VGNVLPL SIP
Sbjct:    1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIP 109          
BLAST of CN184724 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.088e-41
Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 1
Query:   25 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIP 348
            MGRVIRAQRKGAGSVFK+H   RKG A+ RSLDF ER+GY++GV+ +IIHDPGRGAPLA V FR P+RY+ +KELF+A EGM+TGQFVYCGRKATL +GNV+PL  +P
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMP 108          
BLAST of CN184724 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 2.424e-41
Identity = 74/108 (68.52%), Postives = 94/108 (87.04%), Query Frame = 1
Query:   25 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIP 348
            MGRVIR QRKGAGSVFK+H  HRKG A+ R++DF ERNGY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELFVAAEG++TGQFVYCG+KA L +GNVLP+ ++P
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMP 108          
BLAST of CN184724 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 1.203e-40
Identity = 73/108 (67.59%), Postives = 94/108 (87.04%), Query Frame = 1
Query:   25 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIP 348
            MGRVIR QRKGAGSVFK+H  HRKG A+ R++DF ER+GY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELFVAAEG++TGQFVYCG+KA L +GNVLP+ ++P
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMP 108          
BLAST of CN184724 vs. ExPASy Swiss-Prot
Match: RL8_RAT (60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.571e-40
Identity = 72/108 (66.67%), Postives = 94/108 (87.04%), Query Frame = 1
Query:   25 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIP 348
            MGRVIR QRKGAGSVF++H  HRKG AR R++DF ER+GY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELF+AAEG++TGQFVYCG+KA L +GNVLP+ ++P
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMP 108          
BLAST of CN184724 vs. ExPASy Swiss-Prot
Match: RL8_PONAB (60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 1.571e-40
Identity = 72/108 (66.67%), Postives = 94/108 (87.04%), Query Frame = 1
Query:   25 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIP 348
            MGRVIR QRKGAGSVF++H  HRKG AR R++DF ER+GY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELF+AAEG++TGQFVYCG+KA L +GNVLP+ ++P
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMP 108          
The following BLAST results are available for this feature:
BLAST of CN184724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RL8_SOLLC3.152e-5795.3760S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL8_TOBAC2.043e-5694.4460S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL81_ARATH1.014e-5593.5260S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL83_ARATH3.853e-5592.5960S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL82_ARATH2.584e-5187.1660S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_DROME1.088e-4172.2260S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_XENLA2.424e-4168.5260S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]
RL8_XENTR1.203e-4067.5960S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]
RL8_RAT1.571e-4066.6760S ribosomal protein L8 OS=Rattus norvegicus GN=R... [more]
RL8_PONAB1.571e-4066.6760S ribosomal protein L8 OS=Pongo abelii GN=RPL8 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184724 ID=CN184724; Name=CN184724; organism=Citrus sinensis; type=EST; length=348bp
GAGAGTCACAGCGAATCGACTCAAATGGGACGAGTCATTAGAGCACAGCG
TAAGGGAGCGGGCTCCGTCTTCAAGTCGCACACACACCACCGCAAGGGCC
CGGCCAGGTTCCGCTCGCTTGATTTCGGGGAACGCAACGGCTACCTGAAG
GGAGTCATAACGGAGATCATCCATGATCCTGGCCGCGGCGCCCCGCTGGC
CCGGGTCACGTTTCGTCATCCGTTTAGGTACCAGCACCAAAAGGAGCTGT
TCGTGGCGGCTGAAGGGATGTACACTGGGCAGTTCGTGTACTGCGGAAGG
AAGGCGACTTTGGTTGTCGGAAATGTGTTGCCCTTGCGATCGATCCCT
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