CN184722

Overview
NameCN184722
Unique NameCN184722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184722 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.652e-11
Identity = 37/99 (37.37%), Postives = 62/99 (62.63%), Query Frame = 2 
Query:  209 GPMLQRSIVIRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 505
            G  L+ ++V +L+ D     + +  G+ +AVT +ENIG+G +R+ TG V FPV +  + F+ F+GE+L+  V  V K G F + GPV+ I+++   +PD
Sbjct:   19 GRNLRDNLVSKLMKDVEGTCSGRH-GFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
The following BLAST results are available for this feature:
BLAST of CN184722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPB7_SOYBN4.652e-1137.37DNA-directed RNA polymerase II subunit RPB7 OS=Gly... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184722 ID=CN184722; Name=CN184722; organism=Citrus sinensis; type=EST; length=523bp
GAGGGGTTTCTTCGCTTCATTGTGACTGTGAGAGCACCAAGGTTCACGAG
AGAAGAGGACGAGTCACGGACTCAGTGAGTCACAAAACTTCTTCCGTCTA
CAGGGCGAGCAAGGCTTGAGCATTCGGCCCTTATTGTGAAACAAAATGTT
TCTTAAAGTGAAGTTGCCCTGGAATGTTGTAGTACCTGCCGAAAATCTGG
ATGCAAAAGGTCCGATGCTTCAGAGGTCCATTGTCATCCGTCTGTTGGAT
GACTTTGCTCGCAGAAAGGCCACCAAAGATCTTGGATACTTTCTCGCTGT
CACAACTCTGGAGAACATAGGGGAGGGAAGAGTTAGAGAGAACACAGGGG
AGGTTCTCTTTCCTGTTGTTTTCAGTGGTATCACCTTCAAAATTTTCAGG
GGGGAGGTCTTGGACGGGACTGTGCACAAGGTGCTCAAGCATGGTGTTTT
CTTGAAGTGCGGGCCAGTCGAGAACATATACCTTACTTGTTCGAAAATGC
CTGATTACCGTTATGTGCAGGCA
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