CN184721

Overview
NameCN184721
Unique NameCN184721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184721_ssr39 microsatellite CN184721_ssr39:39..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8255 contig Csv1_Contig8255:92..548. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184721 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.847e-14
Identity = 46/120 (38.33%), Postives = 60/120 (50.00%), Query Frame = 3
Query:   96 MSSALDMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY 455
            M+  +DMSLDDIIK N+                         G NR APY+  K     WQHD+F            G    +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ Y
Sbjct:    1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY 108          
BLAST of CN184721 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.483e-13
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  222 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY 455
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HY
Sbjct:   67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 136          
BLAST of CN184721 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.549e-13
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  222 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY 455
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HY
Sbjct:   69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 138          
BLAST of CN184721 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.549e-13
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  222 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY 455
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HY
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 139          
BLAST of CN184721 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.549e-13
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  222 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY 455
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HY
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 139          
BLAST of CN184721 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.941e-13
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  222 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY 455
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HY
Sbjct:   73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 142          
BLAST of CN184721 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.324e-12
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  222 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY 455
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HY
Sbjct:   69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHY 138          
BLAST of CN184721 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  222 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY 455
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HY
Sbjct:   70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 139          
The following BLAST results are available for this feature:
BLAST of CN184721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
REFP2_MOUSE1.847e-1438.33RNA and export factor-binding protein 2 OS=Mus mus... [more]
THOC4_TAEGU3.483e-1348.72THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_MOUSE4.549e-1348.72THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
THOC4_HUMAN4.549e-1348.72THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_BOVIN4.549e-1348.72THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THOC4_XENTR5.941e-1348.72THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THO4B_XENLA1.324e-1247.44THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
THO4A_XENLA1.729e-1247.44THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184721 ID=CN184721; Name=CN184721; organism=Citrus sinensis; type=EST; length=457bp
GCCTCAGCCTTCCTCTCTTTCTACTTTTCCTCTTAATTTCTCTCTCTCTT
ATTACGATTTTATCTTTGATTTTCTATTTTTTGTTATAGTAAAAAATGTC
AAGCGCTTTAGATATGTCTCTTGACGATATCATCAAGAACAACAAAAAGT
CTGGATCTGGCAACTTCCGGGGCCGGGGTCGAGGATCCGGACCCGGCCCT
GCTCGTCGCATCCCCAATCGTGGTGCAAACCGTGTGGCGCCGTATACCAC
CGCCAAAGCGCCGGAGACGACTTGGCAGCACGATATGTTTGCAGATCAGG
TGAGTGCTTTCCCAGTACAGCAGGCGGGGCGGGCTTCAGCTATAGAGACT
GGAACGAAGCTGTACATATCAAATCTGGATTACGGTGTCTCTAATGAAGA
CATCAAGGAACTGTTTTCTGAAGTTGGTGACTTGAAGCGGTACTCAATCC
ATTATGA
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