CN184719

Overview
NameCN184719
Unique NameCN184719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184719_ssr86 microsatellite CN184719_ssr86:86..97. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2117 contig Csv1_Contig2117:49..334. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.471e-24
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 284
            PKKRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRFQRGLKR+PMALIKKLRKAKRE
Sbjct:   13 PKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQPMALIKKLRKAKRE 72          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 284
            PKKRTF+KFS+RGVDLD LLDM  DELVKLF ARARRRFQRGLKRKPMALIKKLRKAKR+
Sbjct:   15 PKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKRD 74          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 284
            PKKRTF+K+S+RGVDLDALLDMS D+LV+LF ARARRRFQRGLKRKPMALIKKLRKAK++
Sbjct:   16 PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKD 75          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 3
Query:  102 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 284
            +PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALIKKLRKAKRE
Sbjct:   13 VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKRE 73          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 3
Query:  102 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 284
            +PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALIKKLRKAKRE
Sbjct:   13 VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKRE 73          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS153_ARATH (40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.712e-21
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 3
Query:  108 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 284
            KKRTFKKFSFRGVDLDALLDMS D+LVKLF +R RRRF RGL RKPMALIKKLRKAK E
Sbjct:   13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIE 71          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS155_ARATH (40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.758e-20
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 3
Query:  108 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 284
            KKRTFKKFSFRGVDLDALLDMS ++LVK FS+R RRRF RGL RKPMALIKKLRKAK E
Sbjct:   12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKME 70          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS152_ARATH (40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.539e-19
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 3
Query:  102 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAK 278
            L KKRTFKKFSF+GVDLDALLDM  D+LV+LF +R RRR  RGL RKPMALIKKLRKAK
Sbjct:   13 LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAK 71          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS15_PODAN (40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.807e-18
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 3
Query:  102 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 284
            L KKRTF+KFS+RGVDLDALLD+++DEL  +  ARARR+  RGLKR+PM LIKKLRKAK+E
Sbjct:   13 LKKKRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQE 73          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS156_ARATH (40S ribosomal protein S15-6 OS=Arabidopsis thaliana GN=RPS15F PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.253e-18
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 3
Query:  108 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 284
            KKRTFKKFSFRG ++DALL MSN +L KLF+AR RRRF RGLK++P+ LIKKLR+AK+E
Sbjct:   17 KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKE 75          
The following BLAST results are available for this feature:
BLAST of CN184719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS15_PICMA4.471e-2490.0040S ribosomal protein S15 OS=Picea mariana GN=RPS1... [more]
RS15_ELAOL1.699e-2388.3340S ribosomal protein S15 OS=Elaeis oleifera GN=RP... [more]
RS15_ORYSJ4.943e-2385.0040S ribosomal protein S15 OS=Oryza sativa subsp. j... [more]
RS154_ARATH4.943e-2385.2540S ribosomal protein S15-4 OS=Arabidopsis thalian... [more]
RS151_ARATH4.943e-2385.2540S ribosomal protein S15-1 OS=Arabidopsis thalian... [more]
RS153_ARATH2.712e-2186.4440S ribosomal protein S15-3 OS=Arabidopsis thalian... [more]
RS155_ARATH1.758e-2084.7540S ribosomal protein S15-5 OS=Arabidopsis thalian... [more]
RS152_ARATH2.539e-1979.6640S ribosomal protein S15-2 OS=Arabidopsis thalian... [more]
RS15_PODAN2.807e-1872.1340S ribosomal protein S15 OS=Podospora anserina GN... [more]
RS156_ARATH6.253e-1872.8840S ribosomal protein S15-6 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184719 ID=CN184719; Name=CN184719; organism=Citrus sinensis; type=EST; length=286bp
GCGGGAGCCTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCT
CTAACCATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGG
ACTGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATT
TGGACGCTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGT
GCACGTGCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGC
TTTGATCAAGAAGCTTCGCAAGGCGAAAAGGGAGGC
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