CN184715

Overview
NameCN184715
Unique NameCN184715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig600 contig Csv1_Contig600:198..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184715 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 3.013e-63
Identity = 107/151 (70.86%), Postives = 125/151 (82.78%), Query Frame = -1
Query:  134 TYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHRH 586
            TYS+LW++R VVF+VDETPIRV  NLE KGIPF KDQAMGVYSSIWNADDWATQGG VKTDWSHAPF+ASYK F IDACE P +     +  KC  + +++FWWDEPT+SEL++HQ+HQL+WVRANH+IYDYC D +RFP  P EC HHRH
Sbjct:  145 TYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDACEIPTTT----DLSKC--NGDQKFWWDEPTVSELSLHQNHQLIWVRANHMIYDYCFDATRFPVTPLECQHHRH 289          
BLAST of CN184715 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.530e-42
Identity = 83/150 (55.33%), Postives = 102/150 (68.00%), Query Frame = -1
Query:  137 YSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAI-PTECVHHR 583
            YS+LWN  Q+VF VDE PIRV  N +  G+ FP DQ M +Y+S+WNADDWAT+GG  KTDWS APFIA+YKGF ID CE  ASV    NAK C +  ++  WWD+P   +L+  Q  +L WVR  + IY+YCTDT R+P I P EC   R
Sbjct:  152 YSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCE--ASV----NAKFCDTQGKR--WWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDTKRYPHISPPECKRDR 293          
BLAST of CN184715 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.431e-41
Identity = 79/149 (53.02%), Postives = 99/149 (66.44%), Query Frame = -1
Query:  137 YSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 583
            YS+LWN  Q+VF VD+ PIRV  N    G+ FP +Q M +Y+S+WNADDWAT+GG  KTDWS APFIASYKGF ID CE  ASV    NAK C +  ++  WWD+P   +L+  Q  +L WVR  + IY+YCTD  R+  +P EC   R
Sbjct:  150 YSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCE--ASV----NAKFCDTQGKR--WWDQPEFRDLDAAQWQKLAWVRNKYTIYNYCTDRKRYSQVPPECTRDR 290          
BLAST of CN184715 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.232e-40
Identity = 75/150 (50.00%), Postives = 98/150 (65.33%), Query Frame = -1
Query:  137 TYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 586
            +YS+LWN   + F VD+TPIRV  N +  G+ +P DQ M +YSS+WNADDWAT+GGR KTDWS APF+ASY+GF +D CE  A       AK C++   +  WWD+P   +L+  Q  +L WVR  H IY+YCTD  R+ A+  EC   R
Sbjct:  150 SYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASA------EAKFCATQGAR--WWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDHDRYAAMAPECKRDR 291          
BLAST of CN184715 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.609e-40
Identity = 77/149 (51.68%), Postives = 102/149 (68.46%), Query Frame = -1
Query:  137 YSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 583
            YS+LWN  Q+VFLVD  PIRV  NL+  G+ FP +Q M VY+S+WNADDWAT+GG  KTDWS APF+A YKGF +D CE  ASV    N++ C++  ++  WWD+    +L+  Q  +L WVR    IY+YCTD +R+P +P EC  +R
Sbjct:  151 YSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCE--ASV----NSRFCATQGKR--WWDQTEFRDLDSFQWRRLKWVRQKFTIYNYCTDRTRYPQLPPECRRNR 291          
BLAST of CN184715 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.113e-40
Identity = 77/150 (51.33%), Postives = 100/150 (66.67%), Query Frame = -1
Query:  137 TYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 586
            TYS+LWN  Q+VF VD  PIR   N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W++APF+ASYKGF ID C+  ASV     AK C++  + R WWD+    +L+  Q  +L WVR    IY+YCTD +RFP +P EC   R
Sbjct:  153 TYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFHIDGCQ--ASV----EAKYCAT--QGRMWWDQKEFRDLDAEQWRRLKWVRMKWTIYNYCTDRTRFPVMPAECKRDR 294          
BLAST of CN184715 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 7.983e-40
Identity = 76/150 (50.67%), Postives = 100/150 (66.67%), Query Frame = -1
Query:  137 TYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 586
            +YS+LWN  Q+VF VD+ PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W  APF+ASY+GF +D CE  ASV    NAK C +  ++  WWD+    +L+ +Q  +L WVR  + IY+YCTD  RFP  P EC   R
Sbjct:  150 SYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYRGFHVDGCE--ASV----NAKFCETQGKR--WWDQKEFQDLDANQYKRLKWVRKRYTIYNYCTDRVRFPVPPPECRRDR 291          
BLAST of CN184715 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.043e-39
Identity = 78/150 (52.00%), Postives = 101/150 (67.33%), Query Frame = -1
Query:  137 TYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 586
            TYS+LWN  Q+VF VD  PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W++APFIASY+GF ID C+  ASV     AK C++  + R WWD+    +L+  Q  +L WVR    IY+YCTD +RFP +P EC   R
Sbjct:  152 TYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHIDGCQ--ASV----EAKYCAT--QGRMWWDQNEFRDLDAEQYRRLKWVRMKWTIYNYCTDRTRFPVMPAECRRDR 293          
BLAST of CN184715 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.174e-37
Identity = 70/146 (47.95%), Postives = 89/146 (60.96%), Query Frame = -1
Query:  149 TYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTEC 586
            TY++LW+ + +VF VD+ PIR + N E K I +P  Q MGVYS++W ADDWAT+GG  K DWS APF A YK FDI+ C  P           C S+     WW+      LN  ++ +  WVR NH++YDYCTD SRFP  P EC
Sbjct:  154 TYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGCPVPGPTF-------CPSNPHN--WWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVPPPEC 290          
BLAST of CN184715 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.409e-36
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = -1
Query:  137 TYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 586
            +YS+LWN  Q+V  VD+ PIR   N +  G+ FP +Q M +YSS+W+ADDWAT+GG  KTDWS+APF ASY  F +D CE     A     + C++   +  WWD+    +L+  Q  +L WVR  + IY+YCTD  R+P +P EC   R
Sbjct:  150 SYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASYTSFHVDGCE----AATPQEVQVCNTKGMR--WWDQKAFQDLDALQYRRLRWVRQKYTIYNYCTDRKRYPTLPPECTKDR 293          
The following BLAST results are available for this feature:
BLAST of CN184715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH9_ARATH3.013e-6370.86Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_SOYBN8.530e-4255.33Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN9.431e-4153.02Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_WHEAT1.232e-4050.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN1.609e-4051.68Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH6.113e-4051.33Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH5_ARATH7.983e-4050.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB1.043e-3952.00Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH6_ARATH2.174e-3747.95Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC1.409e-3645.33Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184715 ID=CN184715; Name=CN184715; organism=Citrus sinensis; type=EST; length=586bp
CCCCGGGCTGCAGGAAAAACATGGAGTACATGTTATGATCGATCTTTTTC
CACCCCGCCCTTTTTTTTTCAACTTTTTTACATAAGAAACGCAAATCCTT
TTTCCTTCAGTCATTCACAATCATTCATGGCTAGTGGCGGTGGTGCACGC
ACTCGGTGGGAATAGCTGGGAACCTAGACGTGTCAGTGCAATAGTCATAG
ATGAGGTGATTGGCTCTAACCCACATGAGCTGGTGGCTTTGGTGCACATT
GAGCTCAGACAATGTTGGCTCATCCCACCAGAACCTTTTCTCAGCACTGC
TGCTGCATTTTTTGGCATTATCGGCACCTGCAACCGACGCTGGGCACTCG
CATGCATCAATATCAAAGCCCTTGTATGATGCAATAAAAGGTGCATGGCT
CCAGTCAGTCTTGACCCTTCCCCCCTGTGTGGCCCAGTCATCAGCATTCC
ATATTGAACTGTACACACCCATGGCTTGGTCCTTTGGGAAGGGAATTCCT
TTGTGCTCCAAGTTAGTGTGCACTCTAATTGGGGTCTCATCCACCAAAAA
TACAACTTGGCGCTGGTTCCAAAGGAGGGAATAGGT
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