CN184702

Overview
NameCN184702
Unique NameCN184702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:83..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 4.165e-35
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NGHSYFNLVL+TNV G GDV SVSIKGS TGWQ MSRNWGQNWQSNSYL+GQSLSFQ+  SDGRTVTSNNVVP  W
Sbjct:  162 FTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGW 240          

HSP 2 Score: 22.3274 bits (46), Expect = 4.165e-35
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            C KKGGIRF
Sbjct:  154 CVKKGGIRF 162          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.104e-34
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NGHSYFNLVLITNVGGAGDVHS  +KGS+TGWQAMSRNWGQNWQSNSYLNGQSLSF++T SDG+T+ SNNV    W
Sbjct:  160 FTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGW 238          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.034e-34
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NGHSYFNLVLI+NVGGAGDVH+VSIKGSKT  WQAMSRNWGQNWQSNSY+N QSLSFQ+T SDGRT+ SN+V P NW
Sbjct:  163 FTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNW 242          

HSP 2 Score: 21.9422 bits (45), Expect = 2.034e-34
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            C KKGGIRF
Sbjct:  155 CMKKGGIRF 163          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.035e-34
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FTVNGHSYFNLVL+TNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQ+TASDGRTVTSNNV    W
Sbjct:  157 FTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          

HSP 2 Score: 21.9422 bits (45), Expect = 2.035e-34
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            C KKGG+RF
Sbjct:  149 CVKKGGVRF 157          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.035e-34
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FTVNGHSYFNLVL+TNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQ+TASDGRTVTSNNV    W
Sbjct:  157 FTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          

HSP 2 Score: 21.9422 bits (45), Expect = 2.035e-34
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            C KKGG+RF
Sbjct:  149 CVKKGGVRF 157          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.211e-34
Identity = 62/79 (78.48%), Postives = 73/79 (92.41%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NGHSYFNLVL+TNVGGAGDVHSV++KGS+T WQ MSRNWGQNWQSN+ LNGQ+LSF++TASDGRTV SNN+ P +W
Sbjct:  163 FTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASW 241          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.478e-34
Identity = 66/86 (76.74%), Postives = 73/86 (84.88%), Query Frame = -1
Query:  278 RRKEE*GFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 535
            RR+    FT+NGHSYFNLVLITNVGGAGDVHS +IKGS+T WQAMSRNWGQNWQSNSYLNGQ+LSF++T SDGRTV S N  P  W
Sbjct:  152 RRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGW 237          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.637e-33
Identity = 68/90 (75.56%), Postives = 74/90 (82.22%), Query Frame = -1
Query:  278 RVRRKEE*G--FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 541
            RVR K   G  FT+NGHSYFNLVL+TNVGGAGDVHSVS+KGS+T WQ MSRNWGQNWQSNSYLNGQSLSF +T SD R+V S NV P  W
Sbjct:  153 RVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTW 242          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.745e-32
Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = -1
Query:  278 RRKEE*GFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 535
            RRK    FT+NGHSYFNLVLITNV GAGDV SVSIKG+ T WQ+MSRNWGQNWQSN+ L+GQ+LSF++T SDGRTV SNN  P NW
Sbjct:  155 RRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNW 240          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.243e-30
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+ GHSYFNLVL+TNVGGAGDV +VS+KGS++GWQAMS NWG NWQ+ + L+GQ LSF++TASDGRTVTS+NV P  W
Sbjct:  159 FTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGW 237          

HSP 2 Score: 22.3274 bits (46), Expect = 1.243e-30
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            CAK+GGIRF
Sbjct:  151 CAKQGGIRF 159          
The following BLAST results are available for this feature:
BLAST of CN184702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA2_ORYSJ4.165e-3583.54Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ARATH1.104e-3481.01Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA8_ARATH2.034e-3482.50Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA4_ORYSJ2.035e-3483.54Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI2.035e-3483.54Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXP15_ARATH3.211e-3478.48Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP10_ARATH5.478e-3476.74Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA5_ARATH4.637e-3375.56Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP14_ARATH8.745e-3274.42Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP11_ORYSJ1.243e-3072.15Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184702 ID=CN184702; Name=CN184702; organism=Citrus sinensis; type=EST; length=541bp
ACCAGAAATCACAACGCTGAATGAAATTATACCCGTTCATTCAATTGAAG
TAATAACTATATATAGAACACAATCATTTCTATTTATAGAGGCCTAGCGG
GTGCCAACAGACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTG
AGCCTCACCTACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAA
ATTCAATTAAATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTG
ACCACCCTCAAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGT
TGCTAGTCACAGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTT
TGGCCGTTAAGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGA
CATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACAT
CTCCTGCTCCTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGT
CCATTGACGGTAAAACCTTATTCCTCCTTTCTTCGCACACG
back to top