CN184696

Overview
NameCN184696
Unique NameCN184696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12798 contig Csv1_Contig12798:6..434. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184696 vs. ExPASy Swiss-Prot
Match: PROSC_HUMAN (Proline synthetase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.741e-18
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 3
Query:  120 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA-----QLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVD 407
            LR+V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+A VPNL M+E+VD
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVD 118          
BLAST of CN184696 vs. ExPASy Swiss-Prot
Match: PROSC_BOVIN (Proline synthetase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.741e-18
Identity = 51/103 (49.51%), Postives = 69/103 (66.99%), Query Frame = 3
Query:  120 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVD 407
            LR+V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+A VPNL+M+E+VD
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLEKASNPQILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVD 118          
BLAST of CN184696 vs. ExPASy Swiss-Prot
Match: YBD6_YEAST (UPF0001 protein YBL036C OS=Saccharomyces cerevisiae GN=YBL036C PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.878e-18
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 3
Query:  180 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVD 407
            +I ++ VSK KP S I+ +Y+ G R FGENYVQE++EKA  LPDD++WHFIG LQ+NK K  LA VPNL  VE++D
Sbjct:   41 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKD-LAKVPNLYSVETID 115          
BLAST of CN184696 vs. ExPASy Swiss-Prot
Match: PROSC_MOUSE (Proline synthetase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.614e-18
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 3
Query:  120 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVD 407
            LR+V +RV Q+  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+A VPNL+M+E+VD
Sbjct:   17 LRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVD 118          
BLAST of CN184696 vs. ExPASy Swiss-Prot
Match: PROSC_DICDI (Proline synthetase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 47/103 (45.63%), Postives = 71/103 (68.93%), Query Frame = 3
Query:  120 LRSVIQRVHQAAERSSRPPDR--IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDKRE 416
            L S  + +    E  S   DR  +++VAVSKTKP  +IR +Y+ GHR FGENY+QE+V K+ +L +  +++WHFIG++QSNK K +L  V NL +VE+V+ ++
Sbjct:   10 LISSYKNIKDRVEIISNKFDRHNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVSKSEELSELNEIKWHFIGSIQSNKSK-ILTSVKNLYVVETVENKK 111          
BLAST of CN184696 vs. ExPASy Swiss-Prot
Match: PROSC_PONAB (Proline synthetase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.513e-17
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  120 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA-----QLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVD 407
            LR+V +RV QA     R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+A VPNL ++E+VD
Sbjct:   17 LRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLGPEIKWHFIGHLQKQNVNKLMA-VPNLFVLETVD 118          
BLAST of CN184696 vs. ExPASy Swiss-Prot
Match: Y394_PSEAE (UPF0001 protein PA0394 OS=Pseudomonas aeruginosa GN=PA0394 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.247e-16
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  120 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDK 410
            +  V  R+ +AA+ + R P  + ++AVSKTKP + +R+ + AG R FGENY+QE + K A+L D  L WHFIG +QSNK +P+     +   V SVD+
Sbjct:    8 IAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELADLPLNWHFIGPIQSNKTRPI---AEHFQWVHSVDR 102          
BLAST of CN184696 vs. ExPASy Swiss-Prot
Match: Y112_PASMU (UPF0001 protein PM0112 OS=Pasteurella multocida GN=PM0112 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.629e-16
Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  120 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA---AQLPDDLEWHFIGNLQSNKVK 359
            L  + Q +  A +++ RP   ++++AVSKTKPV  I Q Y+AG   FGENYVQE VEK    AQ    LEWHFIG LQSNK K
Sbjct:    7 LAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQYFAQKNIPLEWHFIGPLQSNKTK 89          
BLAST of CN184696 vs. ExPASy Swiss-Prot
Match: YKC9_SCHPO (UPF0001 protein C644.09 OS=Schizosaccharomyces pombe GN=SPAC644.09 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.128e-16
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 3
Query:  183 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDKREDCR 425
            + +VAVSK  PV  + + Y AG R FGENY+QE ++K   +PDD++WHFIG+LQS+K K  +A V NL  +E++D  +  R
Sbjct:   24 VLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKK-IASVKNLYSIETIDTEKKAR 103          
BLAST of CN184696 vs. ExPASy Swiss-Prot
Match: Y274_AQUAE (UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_274 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.191e-16
Identity = 43/99 (43.43%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  120 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDKR 413
            L  V++R+ +A ER+ R  +  +++  SKT P  VIR+ Y  G + +GEN VQE ++K   L D DLEWHFIG LQ+NKVK L+  V    ++ S+D++
Sbjct:    7 LSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFLKKYEALKDLDLEWHFIGRLQTNKVKYLMGKV---VLIHSLDRK 102          
The following BLAST results are available for this feature:
BLAST of CN184696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PROSC_HUMAN1.741e-1850.49Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_BOVIN1.741e-1849.51Proline synthetase co-transcribed bacterial homolo... [more]
YBD6_YEAST3.878e-1859.21UPF0001 protein YBL036C OS=Saccharomyces cerevisia... [more]
PROSC_MOUSE6.614e-1848.54Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_DICDI1.473e-1745.63Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_PONAB2.513e-1748.54Proline synthetase co-transcribed bacterial homolo... [more]
Y394_PSEAE1.247e-1643.88UPF0001 protein PA0394 OS=Pseudomonas aeruginosa G... [more]
Y112_PASMU1.629e-1653.01UPF0001 protein PM0112 OS=Pasteurella multocida GN... [more]
YKC9_SCHPO2.128e-1648.15UPF0001 protein C644.09 OS=Schizosaccharomyces pom... [more]
Y274_AQUAE6.191e-1643.43UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184696 ID=CN184696; Name=CN184696; organism=Citrus sinensis; type=EST; length=430bp
GAGGGAAGAATCAGGAACATGAAGAAGAGCGCAAGAGGAGAGAGAATCAT
ATCAACGAACAAGTAGAAGCAGAAACCATGGCTGCGTCTGCCGCCACAGA
TGGCGTTGCAGCGACGGCGCTTCGGTCCGTGATCCAACGGGTCCACCAAG
CCGCCGAGAGATCCAGTCGCCCGCCGGACCGGATTCGAATCGTCGCTGTC
AGCAAAACCAAACCGGTCTCAGTAATCCGTCAGGTTTATGAGGCCGGTCA
CCGATGTTTCGGTGAAAACTACGTTCAAGAAATAGTGGAAAAGGCGGCTC
AGCTTCCAGATGATCTAGAATGGCATTTCATTGGGAACCTGCAGAGCAAT
AAAGTGAAACCTTTATTGGCTGGTGTGCCTAACCTGGCAATGGTAGAAAG
TGTGGACAAACGAGAAGATTGCAGGTCGTC
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