CN184692

Overview
NameCN184692
Unique NameCN184692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length364
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12532 contig Csv1_Contig12532:41..403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184692 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.780e-40
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 3
Query:  141 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 362
            M TDEL KLF ARARRRFQRGLKRKPMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT
Sbjct:   36 MGTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 109          

HSP 2 Score: 45.4394 bits (106), Expect = 1.780e-40
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 2
Query:   29 MADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLD 139
            MADV   V       QPKKRTF+KFS+RGVDLD LLD
Sbjct:    1 MADVSDAVDVGGA--QPKKRTFRKFSYRGVDLDQLLD 35          
BLAST of CN184692 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.714e-40
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 3
Query:  141 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 362
            M+++EL KLF ARARRRFQRGLKR+PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT
Sbjct:   34 MTSEELVKLFHARARRRFQRGLKRQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 107          

HSP 2 Score: 49.2914 bits (116), Expect = 8.714e-40
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 2
Query:   23 LAMADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLD 139
            +A ADV+ G        QPKKRTFKKFS+RGVDLDALLD
Sbjct:    1 MADADVDVG------PVQPKKRTFKKFSYRGVDLDALLD 33          
BLAST of CN184692 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 5.550e-39
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 3
Query:  141 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 362
            MSTD+L +LF ARARRRFQRGLKRKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKT
Sbjct:   37 MSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKT 110          

HSP 2 Score: 46.2098 bits (108), Expect = 5.550e-39
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 2
Query:   29 MADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLD 139
            MADVE          QPKKRTF+K+S+RGVDLDALLD
Sbjct:    1 MADVEVETEVAAGA-QPKKRTFRKYSYRGVDLDALLD 36          
BLAST of CN184692 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.228e-38
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 3
Query:  141 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 362
            MSTD+L KLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT
Sbjct:   35 MSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 108          

HSP 2 Score: 46.2098 bits (108), Expect = 1.228e-38
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 2
Query:   29 MADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLD 139
            MADVE  V        PKKRTFKKF+F+GVDLDALLD
Sbjct:    1 MADVEPEVAAAGV---PKKRTFKKFAFKGVDLDALLD 34          
BLAST of CN184692 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.228e-38
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 3
Query:  141 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 362
            MSTD+L KLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT
Sbjct:   35 MSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 108          

HSP 2 Score: 46.2098 bits (108), Expect = 1.228e-38
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 2
Query:   29 MADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLD 139
            MADVE  V        PKKRTFKKF+F+GVDLDALLD
Sbjct:    1 MADVEPEVAAAGV---PKKRTFKKFAFKGVDLDALLD 34          
BLAST of CN184692 vs. ExPASy Swiss-Prot
Match: RS153_ARATH (40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.286e-34
Identity = 62/74 (83.78%), Postives = 65/74 (87.84%), Query Frame = 3
Query:  141 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 362
            MSTD+L KLF +R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKT
Sbjct:   33 MSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKT 106          

HSP 2 Score: 43.5134 bits (101), Expect = 1.286e-34
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 2
Query:   80 KKRTFKKFSFRGVDLDALLD 139
            KKRTFKKFSFRGVDLDALLD
Sbjct:   13 KKRTFKKFSFRGVDLDALLD 32          
BLAST of CN184692 vs. ExPASy Swiss-Prot
Match: RS155_ARATH (40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.389e-33
Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 3
Query:  141 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 362
            MS ++L K FS+R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKT
Sbjct:   32 MSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKT 105          

HSP 2 Score: 43.5134 bits (101), Expect = 1.389e-33
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 2
Query:   80 KKRTFKKFSFRGVDLDALLD 139
            KKRTFKKFSFRGVDLDALLD
Sbjct:   12 KKRTFKKFSFRGVDLDALLD 31          
BLAST of CN184692 vs. ExPASy Swiss-Prot
Match: RS152_ARATH (40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 8.824e-33
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 3
Query:  141 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 362
            M TD+L +LF +R RRR  RGL RKPMALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKT
Sbjct:   35 MPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKT 108          

HSP 2 Score: 43.1282 bits (100), Expect = 8.824e-33
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 2
Query:   29 MADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLD 139
            MA+VE  V         KKRTFKKFSF+GVDLDALLD
Sbjct:    1 MAEVEPDVSAAALA---KKRTFKKFSFKGVDLDALLD 34          
BLAST of CN184692 vs. ExPASy Swiss-Prot
Match: RS15_XENLA (40S ribosomal protein S15 OS=Xenopus laevis GN=rps15 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.279e-27
Identity = 46/73 (63.01%), Postives = 63/73 (86.30%), Query Frame = 3
Query:  141 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGK 359
            MS +++ +L+ AR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE ++THLR+MII+PEM+GS++GVYNGK
Sbjct:   28 MSYEQVMQLYCARQRRRLNRGLRRKQNSLLKRLRKAKKEAPPMEKPEVIKTHLRDMIILPEMVGSMVGVYNGK 100          

HSP 2 Score: 41.9726 bits (97), Expect = 1.279e-27
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:   74 QPKKRTFKKFSFRGVDLDALLDHVY 148
            Q KKRTFKKF++RGVDLD LLD  Y
Sbjct:    6 QKKKRTFKKFTYRGVDLDQLLDMSY 30          
BLAST of CN184692 vs. ExPASy Swiss-Prot
Match: RS15_XIPMA (40S ribosomal protein S15 OS=Xiphophorus maculatus GN=rps15 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.782e-27
Identity = 47/74 (63.51%), Postives = 63/74 (85.14%), Query Frame = 3
Query:  141 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKT 362
            MS ++L +L+ AR RRR  RGL+RK  +L+K+L KAK+EAPP EKPE V+THLR+M+I+PEM+GS++GVYNGKT
Sbjct:   28 MSYEQLMQLYCARQRRRLNRGLRRKHQSLLKRLPKAKKEAPPMEKPEVVKTHLRDMVILPEMVGSMVGVYNGKT 101          

HSP 2 Score: 39.2762 bits (90), Expect = 4.782e-27
Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = 2
Query:   80 KKRTFKKFSFRGVDLDALLDHVY 148
            KKRTF+KF++RGVDLD LLD  Y
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSY 30          
The following BLAST results are available for this feature:
BLAST of CN184692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RS15_ELAOL1.780e-4094.5940S ribosomal protein S15 OS=Elaeis oleifera GN=RP... [more]
RS15_PICMA8.714e-4090.5440S ribosomal protein S15 OS=Picea mariana GN=RPS1... [more]
RS15_ORYSJ5.550e-3989.1940S ribosomal protein S15 OS=Oryza sativa subsp. j... [more]
RS154_ARATH1.228e-3890.5440S ribosomal protein S15-4 OS=Arabidopsis thalian... [more]
RS151_ARATH1.228e-3890.5440S ribosomal protein S15-1 OS=Arabidopsis thalian... [more]
RS153_ARATH1.286e-3483.7840S ribosomal protein S15-3 OS=Arabidopsis thalian... [more]
RS155_ARATH1.389e-3382.4340S ribosomal protein S15-5 OS=Arabidopsis thalian... [more]
RS152_ARATH8.824e-3378.3840S ribosomal protein S15-2 OS=Arabidopsis thalian... [more]
RS15_XENLA1.279e-2763.0140S ribosomal protein S15 OS=Xenopus laevis GN=rps... [more]
RS15_XIPMA4.782e-2763.5140S ribosomal protein S15 OS=Xiphophorus maculatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184692 ID=CN184692; Name=CN184692; organism=Citrus sinensis; type=EST; length=364bp
CGTTCTCCTATCACTCTAGTCTCTAGCCATGGCGGATGTGGAAACCGGGG
TTGCTGCTGGTGCTGCTGCAGGACAGCCAAAGAAGAGGACATTCAAGAAG
TTCAGCTTCAGAGGTGTTGATTTGGACGCTCTTTTGGACCATGTCTACTG
ATGAGCTCGCCAAGCTATTTAGCGCCCGTGCTCGCAGAAGGTTTCAGAGG
GGGTTGAAAAGGAAGCCTATGGCGTTGATCAAGAAGTTGCGCAAGGCGAA
AAGGGAAGCTCCACCCGGCGAGAAGCCTGAACCAGTTAGGACTCATCTTC
GCAACATGATCATTGTGCCTGAAATGATCGGTAGTATAATTGGTGTTTAC
AATGGCAAGACCTT
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