CN184679

Overview
NameCN184679
Unique NameCN184679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length280
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2453 contig Csv1_Contig2453:74..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.391e-33
Identity = 73/92 (79.35%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 DETEPXXXXXXXXXXXXXSCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            DET P             SCMGAAYGT+KSGVGV SMGVMRPEL+M SIVPVVMAGVLGIYGLIIAVIISTGIN KAKSYYLFDGYAHLSSG
Sbjct:    7 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSG 98
[Close]
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.391e-33
Identity = 73/92 (79.35%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 DETEPXXXXXXXXXXXXXSCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            DET P             SCMGAAYGT+KSGVGV SMGVMRPEL+M SIVPVVMAGVLGIYGLIIAVIISTGIN KAKSYYLFDGYAHLSSG
Sbjct:    8 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSG 99
[Close]
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.391e-33
Identity = 73/92 (79.35%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 DETEPXXXXXXXXXXXXXSCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            DET P             SCMGAAYGT+KSGVGV SMGVMRPEL+M SIVPVVMAGVLGIYGLIIAVIISTGIN KAKSYYLFDGYAHLSSG
Sbjct:    8 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSG 99
[Close]
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.391e-33
Identity = 73/92 (79.35%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 DETEPXXXXXXXXXXXXXSCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            DET P             SCMGAAYGT+KSGVGV SMGVMRPEL+M SIVPVVMAGVLGIYGLIIAVIISTGIN KAKSYYLFDGYAHLSSG
Sbjct:    8 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSG 99
[Close]
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.391e-33
Identity = 73/92 (79.35%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 DETEPXXXXXXXXXXXXXSCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            DET P             SCMGAAYGT+KSGVGV SMGVMRPEL+M SIVPVVMAGVLGIYGLIIAVIISTGIN KAKSYYLFDGYAHLSSG
Sbjct:    8 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSG 99
[Close]
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL4_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.391e-33
Identity = 73/92 (79.35%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 DETEPXXXXXXXXXXXXXSCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            DET P             SCMGAAYGT+KSGVGV SMGVMRPEL+M SIVPVVMAGVLGIYGLIIAVIISTGIN KAKSYYLFDGYAHLSSG
Sbjct:    9 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSG 100
[Close]
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL2_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c2 OS=Arabidopsis thaliana GN=VHA-C2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.391e-33
Identity = 73/92 (79.35%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 DETEPXXXXXXXXXXXXXSCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            DET P             SCMGAAYGT+KSGVGV SMGVMRPEL+M SIVPVVMAGVLGIYGLIIAVIISTGIN KAKSYYLFDGYAHLSSG
Sbjct:    8 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSG 99
[Close]
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL1_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 OS=Arabidopsis thaliana GN=VHA-C1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.391e-33
Identity = 73/92 (79.35%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 DETEPXXXXXXXXXXXXXSCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            DET P             SCMGAAYGT+KSGVGV SMGVMRPEL+M SIVPVVMAGVLGIYGLIIAVIISTGIN KAKSYYLFDGYAHLSSG
Sbjct:    7 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSG 98
[Close]
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.048e-33
Identity = 72/92 (78.26%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    4 DETEPXXXXXXXXXXXXXSCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            DET P             SCMGAAYGT+KSGVGV SMGVMRPEL+M SIVPVVMAGVLGIYGLIIAVIISTGIN K KSYYLFDGYAHLSSG
Sbjct:    8 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSG 99
[Close]
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.048e-33
Identity = 72/92 (78.26%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    4 DETEPXXXXXXXXXXXXXSCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            DET P             SCMGAAYGT+KSGVGV SMGVMRPEL+M SIVPVVMAGVLGIYGLIIAVIISTGIN K KSYYLFDGYAHLSSG
Sbjct:    7 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSG 98
The following BLAST results are available for this feature:
BLAST of CN184679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_PHAAU1.391e-3379.35V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MESCR1.391e-3379.35V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_KALDA1.391e-3379.35V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_GOSHI1.391e-3379.35V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BETVU1.391e-3379.35V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL4_ARATH1.391e-3379.35V-type proton ATPase 16 kDa proteolipid subunit c4... [more]
VATL2_ARATH1.391e-3379.35V-type proton ATPase 16 kDa proteolipid subunit c2... [more]
VATL1_ARATH1.391e-3379.35V-type proton ATPase 16 kDa proteolipid subunit c1... [more]
VATL_TOBAC4.048e-3378.26V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC4.048e-3378.26V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184679 ID=CN184679; Name=CN184679; organism=Citrus sinensis; type=EST; length=280bp
GAGGATGAAACGGAACCGTTCTTCGGCTTCCTCGGCGCTGCCGCCGCCCT
TGTCTTCTCCTGTATGGGAGCTGCATATGGAACATCCAAGAGTGGTGTTG
GTGTGACGTCAATGGGTGTTATGAGGCCTGAGCTGATGATGAATTCGATT
GTGCCAGTTGTTATGGCTGGTGTTTTGGGTATATATGGTTTGATTATTGC
TGTTATTATCAGTACTGGGATTAACCACAAGGCCAAGTCATATTACCTTT
TTGATGGCTATGCTCATCTCTCCTCCGGTT
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