CN184677

Overview
NameCN184677
Unique NameCN184677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184677_ssr332 microsatellite CN184677_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12573 contig Csv1_Contig12573:430..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.056e-42
Identity = 86/102 (84.31%), Postives = 88/102 (86.27%), Query Frame = -1 
Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPD+DDDAF+
Sbjct:  108 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209
[Close]
BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.056e-42
Identity = 86/102 (84.31%), Postives = 88/102 (86.27%), Query Frame = -1 
Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPD+DDDAF+
Sbjct:  108 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209
[Close]
BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.936e-42
Identity = 85/102 (83.33%), Postives = 87/102 (85.29%), Query Frame = -1 
Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              A+QPLPD+DDDAFE
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221
[Close]
BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.936e-42
Identity = 84/102 (82.35%), Postives = 87/102 (85.29%), Query Frame = -1 
Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPD+DD+ F+
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221
[Close]
BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.167e-41
Identity = 85/102 (83.33%), Postives = 86/102 (84.31%), Query Frame = -1 
Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              ASQPLPD+DDD FE
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221
[Close]
BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.396e-41
Identity = 83/102 (81.37%), Postives = 86/102 (84.31%), Query Frame = -1 
Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPD+DD+AFE
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221
[Close]
BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 5.792e-41
Identity = 83/102 (81.37%), Postives = 86/102 (84.31%), Query Frame = -1 
Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV +D              A+QPLPD+DDDAFE
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221
[Close]
BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.290e-40
Identity = 83/102 (81.37%), Postives = 86/102 (84.31%), Query Frame = -1 
Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV ID              A+QPLPD+DD+AFE
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221
[Close]
BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.875e-40
Identity = 82/102 (80.39%), Postives = 85/102 (83.33%), Query Frame = -1 
Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPPEV ID              A+QPLPD+DDD FE
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221
[Close]
BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.364e-40
Identity = 82/102 (80.39%), Postives = 85/102 (83.33%), Query Frame = -1 
Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              A+  LPD+DD+AFE
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221
The following BLAST results are available for this feature:
BLAST of CN184677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN1B_LOTJA1.056e-4284.31GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA1.056e-4284.31GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RAN_VICFA8.936e-4283.33GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANA1_TOBAC8.936e-4282.35GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH1.167e-4183.33GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC3.396e-4181.37GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH5.792e-4181.37GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC1.290e-4081.37GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH2.875e-4080.39GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RANB1_TOBAC8.364e-4080.39GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005O02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184677 ID=CN184677; Name=CN184677; organism=Citrus sinensis; type=EST; length=598bp
TTTTGAATCCTCAATTATCAACACAATATATAAATGAACTAGGATATGGG
GCATCATTTAAACATCCTACAGAAAATTGGATGGCTCCCCCGCTGGTAAA
CAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACATGAATTA
GGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTTCAATCCA
AAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCAATATTGA
ACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCACTCGAAGG
CGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGCAAGTTCA
GCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTGGGGGAGC
AAGGGCAGGAGACTCGACAAAATGCAAGTTAGGATCCCCAGCAAGTTTTC
TGGCAAGGTAAAGAAAAGGCTTCTCAAAGTTGTAATTGCTCTTGGCTGAG
ATCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCTTTGC
TTTCACCTGCCTGTTCTTCACATCGACCTTGTTCCCGCAAAGAACAAT
back to top