CN184676

Overview
NameCN184676
Unique NameCN184676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length326
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12573 contig Csv1_Contig12573:67..387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184676 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.515e-46
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 2 
Query:   62 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTARDQEKFGGLRDGYYIHGQCAIFMFDVNCPL 307
            VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA  QEKFGGLRDGYYIHGQCAI MFDV   L
Sbjct:   19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEKFGGLRDGYYIHGQCAIIMFDVTARL 99

HSP 2 Score: 38.891 bits (89), Expect = 8.515e-46
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 1 
Query:    7 LALPNQQTVDYPSFKLVI 60
            +ALPNQQTVDYPSFKLVI
Sbjct:    1 MALPNQQTVDYPSFKLVI 18

HSP 3 Score: 22.3274 bits (46), Expect = 8.515e-46
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  294 LTARLTYKNV 323
            +TARLTYKNV
Sbjct:   95 VTARLTYKNV 104
[Close]
BLAST of CN184676 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.515e-46
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 2 
Query:   62 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTARDQEKFGGLRDGYYIHGQCAIFMFDVNCPL 307
            VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA  QEKFGGLRDGYYIHGQCAI MFDV   L
Sbjct:   19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEKFGGLRDGYYIHGQCAIIMFDVTARL 99

HSP 2 Score: 38.891 bits (89), Expect = 8.515e-46
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 1 
Query:    7 LALPNQQTVDYPSFKLVI 60
            +ALPNQQTVDYPSFKLVI
Sbjct:    1 MALPNQQTVDYPSFKLVI 18

HSP 3 Score: 22.3274 bits (46), Expect = 8.515e-46
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  294 LTARLTYKNV 323
            +TARLTYKNV
Sbjct:   95 VTARLTYKNV 104
[Close]
BLAST of CN184676 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.515e-46
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 2 
Query:   62 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTARDQEKFGGLRDGYYIHGQCAIFMFDVNCPL 307
            VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA  QEKFGGLRDGYYIHGQCAI MFDV   L
Sbjct:   19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEKFGGLRDGYYIHGQCAIIMFDVTARL 99

HSP 2 Score: 38.891 bits (89), Expect = 8.515e-46
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 1 
Query:    7 LALPNQQTVDYPSFKLVI 60
            +ALPNQQTVDYPSFKLVI
Sbjct:    1 MALPNQQTVDYPSFKLVI 18

HSP 3 Score: 22.3274 bits (46), Expect = 8.515e-46
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  294 LTARLTYKNV 323
            +TARLTYKNV
Sbjct:   95 VTARLTYKNV 104
[Close]
BLAST of CN184676 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.515e-46
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 2 
Query:   62 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTARDQEKFGGLRDGYYIHGQCAIFMFDVNCPL 307
            VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA  QEKFGGLRDGYYIHGQCAI MFDV   L
Sbjct:   19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEKFGGLRDGYYIHGQCAIIMFDVTARL 99

HSP 2 Score: 38.891 bits (89), Expect = 8.515e-46
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 1 
Query:    7 LALPNQQTVDYPSFKLVI 60
            +ALPNQQTVDYPSFKLVI
Sbjct:    1 MALPNQQTVDYPSFKLVI 18

HSP 3 Score: 22.3274 bits (46), Expect = 8.515e-46
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  294 LTARLTYKNV 323
            +TARLTYKNV
Sbjct:   95 VTARLTYKNV 104
[Close]
BLAST of CN184676 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 8.515e-46
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 2 
Query:   62 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTARDQEKFGGLRDGYYIHGQCAIFMFDVNCPL 307
            VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA  QEKFGGLRDGYYIHGQCAI MFDV   L
Sbjct:   19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEKFGGLRDGYYIHGQCAIIMFDVTARL 99

HSP 2 Score: 38.891 bits (89), Expect = 8.515e-46
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 1 
Query:    7 LALPNQQTVDYPSFKLVI 60
            +ALPNQQTVDYPSFKLVI
Sbjct:    1 MALPNQQTVDYPSFKLVI 18

HSP 3 Score: 22.3274 bits (46), Expect = 8.515e-46
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  294 LTARLTYKNV 323
            +TARLTYKNV
Sbjct:   95 VTARLTYKNV 104
[Close]
BLAST of CN184676 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.515e-46
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 2 
Query:   62 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTARDQEKFGGLRDGYYIHGQCAIFMFDVNCPL 307
            VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA  QEKFGGLRDGYYIHGQCAI MFDV   L
Sbjct:   19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEKFGGLRDGYYIHGQCAIIMFDVTARL 99

HSP 2 Score: 38.891 bits (89), Expect = 8.515e-46
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 1 
Query:    7 LALPNQQTVDYPSFKLVI 60
            +ALPNQQTVDYPSFKLVI
Sbjct:    1 MALPNQQTVDYPSFKLVI 18

HSP 3 Score: 22.3274 bits (46), Expect = 8.515e-46
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  294 LTARLTYKNV 323
            +TARLTYKNV
Sbjct:   95 VTARLTYKNV 104
[Close]
BLAST of CN184676 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.515e-46
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 2 
Query:   62 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTARDQEKFGGLRDGYYIHGQCAIFMFDVNCPL 307
            VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA  QEKFGGLRDGYYIHGQCAI MFDV   L
Sbjct:   19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEKFGGLRDGYYIHGQCAIIMFDVTARL 99

HSP 2 Score: 38.891 bits (89), Expect = 8.515e-46
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 1 
Query:    7 LALPNQQTVDYPSFKLVI 60
            +ALPNQQTVDYPSFKLVI
Sbjct:    1 MALPNQQTVDYPSFKLVI 18

HSP 3 Score: 22.3274 bits (46), Expect = 8.515e-46
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  294 LTARLTYKNV 323
            +TARLTYKNV
Sbjct:   95 VTARLTYKNV 104
[Close]
BLAST of CN184676 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.437e-45
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 2 
Query:   62 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTARDQEKFGGLRDGYYIHGQCAIFMFDVNCPL 307
            VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA  QEKFGGLRDGYYIHGQCAI MFDV   L
Sbjct:   19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEKFGGLRDGYYIHGQCAIIMFDVTSRL 99

HSP 2 Score: 38.891 bits (89), Expect = 2.437e-45
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 1 
Query:    7 LALPNQQTVDYPSFKLVI 60
            +ALPNQQTVDYPSFKLVI
Sbjct:    1 MALPNQQTVDYPSFKLVI 18

HSP 3 Score: 21.1718 bits (43), Expect = 2.437e-45
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  294 LTARLTYKNV 323
            +T+RLTYKNV
Sbjct:   95 VTSRLTYKNV 104
[Close]
BLAST of CN184676 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 2.437e-45
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 2 
Query:   62 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTARDQEKFGGLRDGYYIHGQCAIFMFDVNCPL 307
            VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA  QEKFGGLRDGYYIHGQCAI MFDV   L
Sbjct:   19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEKFGGLRDGYYIHGQCAIIMFDVTSRL 99

HSP 2 Score: 38.891 bits (89), Expect = 2.437e-45
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 1 
Query:    7 LALPNQQTVDYPSFKLVI 60
            +ALPNQQTVDYPSFKLVI
Sbjct:    1 MALPNQQTVDYPSFKLVI 18

HSP 3 Score: 21.1718 bits (43), Expect = 2.437e-45
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  294 LTARLTYKNV 323
            +T+RLTYKNV
Sbjct:   95 VTSRLTYKNV 104
[Close]
BLAST of CN184676 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.534e-44
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 2 
Query:   62 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTARDQEKFGGLRDGYYIHGQCAIFMFDVNCPL 307
            VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA  QEKFGGLRDGYYIHGQCAI MFDV   L
Sbjct:   19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEKFGGLRDGYYIHGQCAIIMFDVTARL 99

HSP 2 Score: 34.6538 bits (78), Expect = 1.534e-44
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 1 
Query:    7 LALPNQQTVDYPSFKLVI 60
            +ALP QQ VDYPSFKLVI
Sbjct:    1 MALPGQQAVDYPSFKLVI 18

HSP 3 Score: 22.3274 bits (46), Expect = 1.534e-44
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  294 LTARLTYKNV 323
            +TARLTYKNV
Sbjct:   95 VTARLTYKNV 104
The following BLAST results are available for this feature:
BLAST of CN184676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN_VICFA8.515e-4692.68GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANB1_TOBAC8.515e-4692.68GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]
RAN3_ARATH8.515e-4692.68GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC8.515e-4692.68GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH8.515e-4692.68GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC8.515e-4692.68GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH8.515e-4692.68GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RAN1_ORYSJ2.437e-4592.68GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ORYSI2.437e-4592.68GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RANA1_TOBAC1.534e-4492.68GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184676 ID=CN184676; Name=CN184676; organism=Citrus sinensis; type=EST; length=326bp
CAACTCTTGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAAGCTTCAA
ACTTGTAATTTGTCGGCGATGGTGGCACTGGGAAGACTACCTTTGTGAAG
AGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGT
GGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACGATTCT
ATTGCTGGGACACTGCTCGCGATCAAGAGAAGTTTGGTGGTCTTAGAGAT
GGATACTACATCCATGGGCAATGTGCTATCTTCATGTTTGATGTTAACTG
CCCGCTTGACGTATAAGAATGTTTCC
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