CN184665

Overview
NameCN184665
Unique NameCN184665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length246
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2200 contig Csv1_Contig2200:21..266. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN184665 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.940e-12
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   61 FRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKA 234
            F  PTMA+  L +  VSSA+DMSI+SYD+ H   ++  R++ EVM+++EAWLVKHGKA
Sbjct:    3 FLKPTMAILFLAMVAVSSAVDMSIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGKA 60
The following BLAST results are available for this feature:
BLAST of CN184665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RD21A_ARATH3.940e-1255.17Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184665 ID=CN184665; Name=CN184665; organism=Citrus sinensis; type=EST; length=246bp
GAGGATCTTTCTTCTCCCAAAAAGAAAAAAAAAAAGTTCTTTTCTCAAAA
GATGGGTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTTTTTCTCT
TCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGATAAAACC
CATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTATGGCTAT
GTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCTTTG
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