CN184664

Overview
NameCN184664
Unique NameCN184664
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:773..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184664 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.004e-25
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = -2
Query:  297 FAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 485
            F+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  279 FSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CN184664 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.110e-24
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = -2
Query:  321 FAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 485
            +AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  390 YAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CN184664 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.450e-24
Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = -2
Query:  300 FAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 485
            FAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  398 FAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CN184664 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.834e-19
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = -2
Query:  324 LAFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 491
            L   WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  407 LCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CN184664 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.752e-14
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = -2
Query:  321 WGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 479
            WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  420 WGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CN184664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CYSPL_SOLLC1.004e-2574.60Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYA_ORYSJ1.110e-2480.00Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.450e-2466.13Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYB_ORYSJ1.834e-1967.86Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ6.752e-1450.88Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184664 ID=CN184664; Name=CN184664; organism=Citrus sinensis; type=EST; length=498bp
CCGCTGAATGACGCCAGGGATTTGGTAGAGGACATTGGAAATAGATAACA
ACAATTTGTTTGTGCATTGTTCAGATTCAACGCAGATAGATAACTTACAA
CGCTATATACCAAACCAACGTCCGAATAAATATTTAACAGACCATCCACC
TGCCGGTACATTAACGTTTGGAATGAAATGCAGTAGAATGAACTAAGGCC
GGGGAGAAACTCATTCACAAGCACGAATATTTTCATCCTCCCTTCGGCCT
TCCACTGCTCTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCT
TGATTTCCATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGTAATGCCCT
CACTCCCAATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACAT
TACAGATGGGATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAG
GTGGCAGCCTCAAGCGGGCAGCATCCCCATGCAAAAGCAAGAGTTACC
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