CN184656

Overview
NameCN184656
Unique NameCN184656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1955 contig Csv1_Contig1955:407..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E1_ARATH (Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.542e-42
Identity = 79/102 (77.45%), Postives = 90/102 (88.24%), Query Frame = -1
Query:  193 CANGGKWTVIFPIGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 495
            CANGGKWT+ FP  KSD SWLYTLLA+IGEQFDHGDEICGAVVN+R +QE+IS+WTKNASNEAAQ+SIGKQWKE LDY+++IGFI HEDAK  D  +KN YT
Sbjct:  133 CANGGKWTMTFPKEKSDKSWLYTLLALIGEQFDHGDEICGAVVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDYNNSIGFIIHEDAKKLDRNAKNAYT 234          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E1_WHEAT (Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.222e-39
Identity = 76/102 (74.51%), Postives = 87/102 (85.29%), Query Frame = -1
Query:  193 CANGGKWTVIFPIGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 495
            CANGGKWT+    GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR +QE++++WTKNA+NEAAQ+SIGKQWKE LDY D+IGFI HEDAK  D   KNRYT
Sbjct:  113 CANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHEDAKRSDKGPKNRYT 214          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E1_MAIZE (Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.084e-39
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = -1
Query:  193 CANGGKWTVIFPIGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 495
            CANGGKWT+    GKSDT WL+TLLAMIGEQFD+GDEICGAVV+VR +QE+I++WTKNA+NEAAQ+SIGKQWKELLDY D+IGFI H+DAK  D   K RYT
Sbjct:  116 CANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQVSIGKQWKELLDYKDSIGFIVHDDAKKMDKGLKERYT 217          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E1_ORYSJ (Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.722e-39
Identity = 76/102 (74.51%), Postives = 87/102 (85.29%), Query Frame = -1
Query:  193 CANGGKWTVIFPIGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 495
            CANGGKWT     GKSDT WL+TLLAMIGEQFD+GDEICGAVV+VR +QE+I++WTKNA+NEAAQ+SIGKQWKE LDY D+IGFI H+DAK  D   KNRYT
Sbjct:  125 CANGGKWTFSCGRGKSDTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHDDAKKMDKGLKNRYT 226          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E4_ARATH (Putative eukaryotic translation initiation factor 4E-4 OS=Arabidopsis thaliana GN=At1g29550 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.817e-36
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = -1
Query:  193 CANGGKWTVIFPIGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 495
            CANGGKW+++FP    + +WL TLLA++GEQFD GDEICGAV+N RAR ++ISLWTKNA+NE AQ+SIGKQWKELL Y++TIGFI HEDAK  D  +K RYT
Sbjct:  138 CANGGKWSMMFPKATLECNWLNTLLALVGEQFDQGDEICGAVLNFRARGDRISLWTKNAANEEAQLSIGKQWKELLGYNETIGFIVHEDAKTLDRDAKRRYT 239          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E5_ARATH (Eukaryotic translation initiation factor 4E-5 OS=Arabidopsis thaliana GN=At1g29590 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.679e-36
Identity = 70/102 (68.63%), Postives = 83/102 (81.37%), Query Frame = -1
Query:  193 CANGGKWTVIFPIGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 495
            CANGGKWT+ FP    +++WL TLLA++GEQFD GDEICGAV+N R R ++ISLWTK A+NE AQ+SIGKQWKELL Y+DTIGFI HEDAK  D  +K RYT
Sbjct:  138 CANGGKWTMFFPRATLESNWLNTLLALVGEQFDQGDEICGAVLNFRTRGDRISLWTKKAANEEAQLSIGKQWKELLGYNDTIGFIVHEDAKTLDRDAKRRYT 239          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E2_WHEAT (Eukaryotic translation initiation factor 4E-2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.162e-28
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = -1
Query:  193 CANGGKWTVIFPIGKS-DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSK-NRYT 495
            CANGGKWTVI     + DT WL T +A+IGEQFD   EICG V +VR RQ+K+SLWTK ASNEA Q+ IGK+WKE++DY+D + + FH+D++    S+  RYT
Sbjct:  106 CANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVASVRQRQDKLSLWTKTASNEAVQVDIGKKWKEVIDYNDKMVYSFHDDSRSQKPSRGGRYT 208          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E2_MAIZE (Eukaryotic translation initiation factor 4E-2 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.823e-28
Identity = 58/105 (55.24%), Postives = 80/105 (76.19%), Query Frame = -1
Query:  193 CANGGKWTVIFPIGKS---DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSK-NRYT 495
            CANGGKWTV  P  +    +T WL TL+A+IGEQFD  ++ICG V +VRAR +K++LWT+ ASNEA Q++IGK+WK+++DY+D I + FH+D+K D  S+  RYT
Sbjct:  113 CANGGKWTV--PCNRKATFETMWLETLMALIGEQFDETEDICGIVASVRARGDKLALWTRTASNEAVQVNIGKKWKDVIDYNDKITYTFHDDSKRDKPSRGGRYT 215          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E2_ORYSJ (Eukaryotic translation initiation factor 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 4.077e-27
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = -1
Query:  205 CANGGKWTVIFPIGKSDT---SWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSK 495
            CANGGKWTV  P  +  T    WL TL+A+IGEQFD  +EICG V +VR R +K++LWT+ ASNEA Q++IGK+WKE++DY+D + + FH+DAK +  S+
Sbjct:  103 CANGGKWTV--PCSRKTTLENMWLETLMALIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFHDDAKREKPSR 200          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E2_ARATH (Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 5.510e-24
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = -1
Query:  223 CANGGKWTVIFPIGKS---DTSWLYTLLAMIGEQFDHGDEICGAVVNVR--ARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAK 495
            CANGGKWT +    +    D  WL TL+A+IGEQFD  DEICG V +VR  ++Q+K+SLWT+  SNEA  M IGK+WKE+LD +D I F  H+D++
Sbjct:   97 CANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEADEICGVVASVRPQSKQDKLSLWTRTKSNEAVLMGIGKKWKEILDVTDKITFNNHDDSR 192          
The following BLAST results are available for this feature:
BLAST of CN184656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF4E1_ARATH1.542e-4277.45Eukaryotic translation initiation factor 4E-1 OS=A... [more]
IF4E1_WHEAT1.222e-3974.51Eukaryotic translation initiation factor 4E-1 OS=T... [more]
IF4E1_MAIZE2.084e-3974.51Eukaryotic translation initiation factor 4E-1 OS=Z... [more]
IF4E1_ORYSJ2.722e-3974.51Eukaryotic translation initiation factor 4E-1 OS=O... [more]
IF4E4_ARATH2.817e-3668.63Putative eukaryotic translation initiation factor ... [more]
IF4E5_ARATH3.679e-3668.63Eukaryotic translation initiation factor 4E-5 OS=A... [more]
IF4E2_WHEAT2.162e-2857.28Eukaryotic translation initiation factor 4E-2 OS=T... [more]
IF4E2_MAIZE2.823e-2855.24Eukaryotic translation initiation factor 4E-2 OS=Z... [more]
IF4E2_ORYSJ4.077e-2755.00Eukaryotic translation initiation factor 4E-2 OS=O... [more]
IF4E2_ARATH5.510e-2454.17Eukaryotic translation initiation factor 4E-2 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005N14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184656 ID=CN184656; Name=CN184656; organism=Citrus sinensis; type=EST; length=495bp
CTTTAAACTTCAAATATATTGCAAAGGTAAAATCAGCTACCGTTTTAAAG
AACCTTTTAAGAGGGTATTAGTACAGAAAACAGGAAATGGCAAAATGTTT
CAGAGCTCTATAACAACTAACAAGCCTACTGTCATCCAGAAAATACAATG
CATTTCCTGGGACTACACTGCAAAACTCTGTACAGTTTATGTTGTGTAGC
GATTCTTTGACCTGTTGTCATGCTTTGCATCCTCATGAAAGATGAACCCT
ATGGTGTCACTATAATCAAGCAACTCCTTCCACTGTTTCCCAATGCTCAT
CTGAGCAGCTTCATTTGAAGCATTCTTGGTCCACAGAGATATCTTTTCCT
GCCTAGCTCTAACATTTACAACTGCTCCACAGATTTCATCTCCATGATCA
AACTGTTCTCCAATCATTGCCAGCAACGTATACAGCCAAGAAGTATCAGA
TTTTCCTATAGGAAAGATGACTGTCCACTTCCCGCCATTAGCACA
back to top