CN184655

Overview
NameCN184655
Unique NameCN184655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1955 contig Csv1_Contig1955:31..440. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184655 vs. ExPASy Swiss-Prot
Match: IF4E1_ORYSJ (Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.350e-39
Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 2
Query:  104 IVGDDEPSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFQ 343
            I  DD       A    PHPLEH+WTFWFDNP  KSKQATWGSS+R I+TFS+VE+FWSLYNNIHHPSKL VGADF+CF+
Sbjct:   34 IADDDSGHAPPQANPAAPHPLEHAWTFWFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFK 113          

HSP 2 Score: 54.299 bits (129), Expect = 3.350e-39
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 3
Query:  330 FIVFKNKIEPKWEDPVCANGGKWT 401
            F  FKNKIEPKWEDP+CANGGKWT
Sbjct:  109 FHCFKNKIEPKWEDPICANGGKWT 132          
BLAST of CN184655 vs. ExPASy Swiss-Prot
Match: IF4E1_ARATH (Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.043e-37
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 2
Query:  110 GDDEPSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFQ 343
            GD    ++S + + + HPLEHSWTFWFDNP  KSKQ +WGSS+R ++TFS+VEEFWSLYNN+ HPSKLA GADFYCF+
Sbjct:   44 GDGNVDESSKSGVPESHPLEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHGADFYCFK 121          

HSP 2 Score: 52.373 bits (124), Expect = 1.043e-37
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 3
Query:  330 FIVFKNKIEPKWEDPVCANGGKWTVIF 410
            F  FK+ IEPKWEDP+CANGGKWT+ F
Sbjct:  117 FYCFKHIIEPKWEDPICANGGKWTMTF 143          
BLAST of CN184655 vs. ExPASy Swiss-Prot
Match: IF4E1_MAIZE (Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.918e-37
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 2
Query:  158 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFQ 343
            HPLEHSWTFWFDNP +KSKQA WGSS+R I+TFS+VEEFW LYNNI+HPSKL VGADF+CF+
Sbjct:   43 HPLEHSWTFWFDNPQSKSKQAAWGSSIRPIHTFSTVEEFWGLYNNINHPSKLIVGADFHCFK 104          

HSP 2 Score: 55.4546 bits (132), Expect = 3.918e-37
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 3
Query:  330 FIVFKNKIEPKWEDPVCANGGKWTV 404
            F  FKNKIEPKWEDP+CANGGKWT+
Sbjct:  100 FHCFKNKIEPKWEDPICANGGKWTI 124          
BLAST of CN184655 vs. ExPASy Swiss-Prot
Match: IF4E1_WHEAT (Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 2.232e-34
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 2
Query:  104 IVGDDEPSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFQ 343
            I  D + S  + A     HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW LYNNIH+PSKL VGADF+CF+
Sbjct:   22 IADDGDGSSAAAAGRITAHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFK 101          

HSP 2 Score: 55.4546 bits (132), Expect = 2.232e-34
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 3
Query:  330 FIVFKNKIEPKWEDPVCANGGKWTV 404
            F  FKNKIEPKWEDP+CANGGKWT+
Sbjct:   97 FHCFKNKIEPKWEDPICANGGKWTI 121          
BLAST of CN184655 vs. ExPASy Swiss-Prot
Match: IF4E4_ARATH (Putative eukaryotic translation initiation factor 4E-4 OS=Arabidopsis thaliana GN=At1g29550 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.786e-27
Identity = 54/110 (49.09%), Postives = 70/110 (63.64%), Query Frame = 2
Query:   44 DQTNTKNPNPSXXXXXXXXXIVGDDEP---------SKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFQE 346
            D   T +P+P          I GD++          SK ST V+Q+ H  ++SWTFWFDNP +KS Q  WGSS+RS+YTF ++EEFWSLYNNIH P+K   GAD YCF++
Sbjct:   18 DPNTTTSPSPKEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHCFQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKD 127          
BLAST of CN184655 vs. ExPASy Swiss-Prot
Match: IF4E5_ARATH (Eukaryotic translation initiation factor 4E-5 OS=Arabidopsis thaliana GN=At1g29590 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.847e-26
Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 2
Query:   44 DQTNTKNPNPSXXXXXXXXXIVGDDEP---------SKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFQE 346
            D   T +P+P          I GD++          SK ST V+Q+ H  ++SWTFWFDNP +KS Q  WGSS+RS+YTF+++EEFWSLYNNIH P+K   G+D YCF++
Sbjct:   18 DPNTTTSPSPIEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHCFQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFATIEEFWSLYNNIHPPTKWVSGSDLYCFKD 127          
BLAST of CN184655 vs. ExPASy Swiss-Prot
Match: IF4E2_MAIZE (Eukaryotic translation initiation factor 4E-2 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.416e-23
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 2
Query:  122 PSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFQ 343
            P   +    + PH L   WTFW+D        A WG+S++  YTF +VEEFWS+Y+ I  PSKL+  ADF+ F+
Sbjct:   28 PEAGAATEAKGPHKLHRQWTFWYDIQTKTKSGAAWGTSLKKAYTFDTVEEFWSMYDQIFRPSKLSGNADFHLFK 101          

HSP 2 Score: 48.521 bits (114), Expect = 6.416e-23
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 3
Query:  330 FIVFKNKIEPKWEDPVCANGGKWTV 404
            F +FK  +EPKWEDP CANGGKWTV
Sbjct:   97 FHLFKAGVEPKWEDPECANGGKWTV 121          
BLAST of CN184655 vs. ExPASy Swiss-Prot
Match: IF4E2_ORYSJ (Eukaryotic translation initiation factor 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.087e-22
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 2
Query:  140 AVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFQ 343
            A  + PH L   W FW+D        A WG+S+R  YTF +VEEFW LY+ I  PSK+ V ADF+ F+
Sbjct:   24 AAAKAPHKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHLFK 91          

HSP 2 Score: 48.521 bits (114), Expect = 1.087e-22
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 3
Query:  330 FIVFKNKIEPKWEDPVCANGGKWTV 404
            F +FK  +EPKWEDP CANGGKWTV
Sbjct:   87 FHLFKAGVEPKWEDPECANGGKWTV 111          
BLAST of CN184655 vs. ExPASy Swiss-Prot
Match: IF4E2_WHEAT (Eukaryotic translation initiation factor 4E-2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.394e-22
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 2
Query:  155 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFQ 343
            PH L+  WTFW+D        A WG+S++  YTF +VEEFW LY+ I  PSKL   ADF+ F+
Sbjct:   32 PHKLQRQWTFWYDIQTKPKPGAAWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFHLFK 94          

HSP 2 Score: 50.0618 bits (118), Expect = 2.394e-22
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 3
Query:  330 FIVFKNKIEPKWEDPVCANGGKWTVI 407
            F +FK  +EPKWEDP CANGGKWTVI
Sbjct:   90 FHLFKAGVEPKWEDPECANGGKWTVI 115          
BLAST of CN184655 vs. ExPASy Swiss-Prot
Match: IF4E2_ARATH (Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.331e-21
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 2
Query:  134 STAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFQ 343
            +T   +QPH LE  W+FWFDN     K A WG+S+R  YTF +VE+FW L+  I   SKL   A+ + F+
Sbjct:   18 ATEAEKQPHKLERKWSFWFDNQ--SKKGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKLTANAEIHLFK 85          

HSP 2 Score: 45.8246 bits (107), Expect = 4.331e-21
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  336 VFKNKIEPKWEDPVCANGGKWT 401
            +FK  +EPKWEDP CANGGKWT
Sbjct:   83 LFKAGVEPKWEDPECANGGKWT 104          
The following BLAST results are available for this feature:
BLAST of CN184655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
IF4E1_ORYSJ3.350e-3970.00Eukaryotic translation initiation factor 4E-1 OS=O... [more]
IF4E1_ARATH1.043e-3766.67Eukaryotic translation initiation factor 4E-1 OS=A... [more]
IF4E1_MAIZE3.918e-3780.65Eukaryotic translation initiation factor 4E-1 OS=Z... [more]
IF4E1_WHEAT2.232e-3458.75Eukaryotic translation initiation factor 4E-1 OS=T... [more]
IF4E4_ARATH9.786e-2749.09Putative eukaryotic translation initiation factor ... [more]
IF4E5_ARATH2.847e-2648.18Eukaryotic translation initiation factor 4E-5 OS=A... [more]
IF4E2_MAIZE6.416e-2343.24Eukaryotic translation initiation factor 4E-2 OS=Z... [more]
IF4E2_ORYSJ1.087e-2247.06Eukaryotic translation initiation factor 4E-2 OS=O... [more]
IF4E2_WHEAT2.394e-2249.21Eukaryotic translation initiation factor 4E-2 OS=T... [more]
IF4E2_ARATH4.331e-2145.71Eukaryotic translation initiation factor 4E-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184655 ID=CN184655; Name=CN184655; organism=Citrus sinensis; type=EST; length=411bp
CCGAGAGGAAATGGCTGGAGAGAGCGATAACCCAAGAACTGAAGACCAAA
CAAACACCAAAAACCCTAACCCTAGCGAAGAAGAGGAGCTGGAGGAAGGC
GAGATCGTTGGCGACGATGAGCCCTCGAAGAATTCAACCGCCGTGATGCA
ACAGCCGCATCCTCTCGAACACTCTTGGACCTTCTGGTTCGATAACCCTT
TTGCCAAATCAAAACAAGCCACGTGGGGTAGCTCCATGCGCTCCATCTAC
ACCTTCTCCTCCGTTGAAGAGTTCTGGAGCCTTTACAACAATATACATCA
TCCGAGCAAGTTGGCTGTGGGAGCAGACTTTTATTGTTTTCAAGAATAAG
ATTGAGCCAAAATGGGAGGACCCAGTTTGTGCTAATGGCGGGAAGTGGAC
TGTCATCTTTC
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