CN184648

Overview
NameCN184648
Unique NameCN184648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11023 contig Csv1_Contig11023:558..1284. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184648 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.787e-39
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = -2
Query:  466 ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 726
            ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEA+DLVKTCFASATERDIYTGD+LEIV+LN  GI RE MELRKD
Sbjct:  137 ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTCFASATERDIYTGDRLEIVILNASGIRREEMELRKD 223          
BLAST of CN184648 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.386e-34
Identity = 73/87 (83.91%), Postives = 78/87 (89.66%), Query Frame = -2
Query:  466 ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 726
            ERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAEAVDLVKT FASATERDIYTGDKLEI++L  DGI  E M+LRKD
Sbjct:  137 ERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223          
BLAST of CN184648 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.542e-34
Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = -2
Query:  466 ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 726
            ER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK  FASATERDIYTGDKLEIVV+NK G  REY++LRKD
Sbjct:  135 ERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221          
BLAST of CN184648 vs. ExPASy Swiss-Prot
Match: PSB1_DICDI (Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  466 ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 726
            ERV YSSQGSG+ L++P LDNQ+   +  ++     V   S  + V  VK    SA ERDIYTGD  +IVV++K+G+H E  EL+ D
Sbjct:  153 ERVKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDV---SCEQVVSFVKDSITSAGERDIYTGDFADIVVVDKNGVHWEKFELKLD 236          
BLAST of CN184648 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  466 ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 726
            +R  Y + GS S ++ P LDNQ+   +   +       PLS+ +AV LVK  F SA ERD+YTGD L+I ++ K+GI  E + LRKD
Sbjct:  155 QRDTYKAGGSASAMLQPLLDNQIGFKNMENVEQ----VPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237          
BLAST of CN184648 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  466 ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 726
            +R  Y + GS S ++ P LDNQ+   +   +       PLS+ +AV LVK  F SA ERD+YTGD L+I ++ K+GI  E + LRKD
Sbjct:  156 QRDTYKAGGSASAMLQPLLDNQIGFKNMENVEQ----VPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238          
The following BLAST results are available for this feature:
BLAST of CN184648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSB1_PETHY7.787e-3991.95Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1_ARATH3.386e-3483.91Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ7.542e-3482.76Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB1_DICDI1.252e-1247.13Proteasome subunit beta type-1 OS=Dictyostelium di... [more]
PSB1B_CARAU6.213e-1243.68Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU6.213e-1243.68Proteasome subunit beta type-1-A OS=Carassius aura... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184648 ID=CN184648; Name=CN184648; organism=Citrus sinensis; type=EST; length=727bp
GAGGCAATTATTAAATATGTTATTCTCAAATGGCCTCCTGTTACCAGGAA
AGACCCATCAAGTTTCATCAACTATAAAAGTCATTAAATTAAGGCCACAT
CACTTGCCTGAAACGTGCAAGCCTTAACTGAAACTGGAGCCCTGCTATCA
TTTGTCGAAGTACAGAGCAAATATAATACTGAAATATAGACGCACACCAG
ATGTCATTTGAAAACCAAATATATAATTTATCCTTAACGAAAATAACACC
GGATCCATTCTTCCAAACATTATAGGCTACTAGTACAAGAAACTAACGTC
TTCTAAGGCATCATCACTGCAACATATGCACTAGTAAGGAAAGTTATATC
AAACTGGATTCATAAGAAAATGTGAAACCAGGACAACACAAGAACACTGA
GAACTTGCTGATGGCAGCTCCACCTACTTCAGCTTGACCAGTGTGGCATG
ATTCCAAAGAGATTAATCCTTCCTCAGTTCCATGTATTCACGATGAATAC
CATCTTTGTTTAGGACAACAATTTCAAGTTTGTCTCCCGTGTATATGTCC
CTCTCAGTTGCTGATGCAAAACAAGTTTTGACCAAATCAACTGCTTCAGC
CTCTGAAAGAGGAGTAACAGCATCCTGGGCAGGCAATAGGAGAGGACTGG
GAGACTTTAGTTGGTTATCGAGGAATGGCATGATGAGCGTGGAACCAGAA
CCCTGGGAGCTATATCCAACCCTCTCA
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