CN184646

Overview
NameCN184646
Unique NameCN184646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11237 contig Csv1_Contig11237:441..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184646 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.370e-14
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = -3
Query:  230 RSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKL 409
            + L+FLRLNNN L+G IPR LT +  L+V D+SNN L G IPV+G F  F   SF N KL
Sbjct:  140 KKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSLFTPISFANTKL 199          

HSP 2 Score: 28.1054 bits (61), Expect = 6.370e-14
Identity = 15/38 (39.47%), Postives = 23/38 (60.53%), Query Frame = -2
Query:  408 ISGKIPKELGNLKKPLSAWICIRIKLEGEIPKSFANLK 521
            I+G IP++LGNL + +S  + +   L G IP +   LK
Sbjct:  104 ITGTIPEQLGNLTELVSLDLYLN-NLSGPIPSTLGRLK 140          
BLAST of CN184646 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 2.476e-12
Identity = 35/58 (60.34%), Postives = 39/58 (67.24%), Query Frame = -3
Query:  230 LKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKL 403
            L+FLRL NN L+G IPR LT L  L V D+SNN L G IPV+G F  F   SF NNKL
Sbjct:  144 LRFLRLYNNSLSGEIPRSLTALP-LDVLDISNNRLSGDIPVNGSFSQFTSMSFANNKL 200          

HSP 2 Score: 25.409 bits (54), Expect = 2.476e-12
Identity = 14/37 (37.84%), Postives = 22/37 (59.46%), Query Frame = -2
Query:  411 ISGKIPKELGNLKKPLSAWICIRIKLEGEIPKSFANL 521
            I+G+IP+ELG+L + +S  +     + G IP S   L
Sbjct:  106 ITGEIPEELGDLMELVSLDLFAN-NISGPIPSSLGKL 141          
BLAST of CN184646 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 1.997e-11
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = -3
Query:  230 LKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKL 403
            L+FLRLNNN L+G IP  LT++  L+V D+SNN L G IPV+G F  F   SF NN L
Sbjct:  149 LRFLRLNNNSLSGEIPMTLTSVQ-LQVLDISNNRLSGDIPVNGSFSLFTPISFANNSL 205          

HSP 2 Score: 25.0238 bits (53), Expect = 1.997e-11
Identity = 14/37 (37.84%), Postives = 22/37 (59.46%), Query Frame = -2
Query:  411 ISGKIPKELGNLKKPLSAWICIRIKLEGEIPKSFANL 521
            I+G+IP+ELG+L + +S  +     + G IP S   L
Sbjct:  111 ITGEIPEELGDLVELVSLDLYAN-SISGPIPSSLGKL 146          
BLAST of CN184646 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = -3
Query:  221 LKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENN-KLNGP 403
            L+FLRLNNN LTGSIP  LT ++ L+V D+SNN L G++P +G F  F   SF NN  L GP
Sbjct:  143 LRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGP 204          
The following BLAST results are available for this feature:
BLAST of CN184646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
BAK1_ARATH6.370e-1456.67BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK5_ARATH2.476e-1260.34Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
SERK4_ARATH1.997e-1156.90Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
SERK1_ARATH7.813e-1156.45Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184646 ID=CN184646; Name=CN184646; organism=Citrus sinensis; type=EST; length=522bp
TTTTTTTTAGCTTACATAATCTTATTTTAATTGCTTTAGTTACTTCATAC
ATGAACAGTCACTGCCGCTGACATAATATATCTAGCCATTCGATCAAGCT
GATGCACACAATATAATTTTACCCTATACGAGTCTTTAACATTATGGTCT
TCAATAGAAGACGGAGGGTTTTCAACCTTCTTCAGCATCCAAAATCATAA
GGCACCAGTCCTTGCAGCTCTGGTCCATTGAGTTTATTATTTTCAAAACT
CTCCATAGGAAAGCTTCTAAAAGGACCATCAACAGGGATTGTCCCACAGA
GACCATTGTTAGAAACATCAAAAACTTTGAGGTCCGACAGGGTGGTCAGC
TCCCTCGGAATTGATCCTGTTAGTTTGTTGTTGTTCAACCGCAGAAATTT
AAGTGACCTTCAAATTGGCAAAGGACTTTGGTATTTCTCCTTCCAGTTTA
ATTCTGATACATATCCATGCTGACAAAGGCTTTTTCAAATTACCTAACTC
TTTCGGAATTTTCCCACTTATG
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